PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g20510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 151aa MW: 15630.6 Da PI: 4.3262 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.5 | 8e-15 | 2 | 40 | 64 | 102 |
NF-YC 64 lhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +h+eenkrrtl+k+diaa+++rtd+fdflvdi+prde+k CA06g20510 2 IHSEENKRRTLQKNDIAAVISRTDTFDFLVDIIPRDEVK 40 79**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.3E-10 | 2 | 36 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.58E-7 | 3 | 36 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MIHSEENKRR TLQKNDIAAV ISRTDTFDFL VDIIPRDEVK DEGVGLGLAP GGVPYYYPPL 60 GQPDPGGVML GRPAVPAGVV PGAVPGVVPG TVPGTVPGVV PGAVPGVDPS MYVPHLPFQV 120 WQSMWQISED HSYPSGGGSS SGQGTDDSQM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 14 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576950.1 | 4e-78 | PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
Swissprot | Q9SMP0 | 6e-32 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2G2ZD13 | 1e-100 | A0A2G2ZD13_CAPAN; Nuclear transcription factor Y subunit C-3 | ||||
STRING | Solyc06g072040.1.1 | 2e-48 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 7e-21 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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