PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g20500

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 96aa MW: 10575.1 Da PI: 4.7207

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g20500	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	115.5	2.6e-36	1	66	30	95
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 +kadedv+misae+Pvl++kace+fi eltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi CA06g20500 1 MKADEDVRMISAETPVLFAKACEMFIQELTLRSWIHSEENKRRTLQKNDIAAAISRTDTFDFLVDI 66 9****************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.0E-14	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.2E-23	1	66	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.1E-29	1	66	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MKADEDVRMI SAETPVLFAK ACEMFIQELT LRSWIHSEEN KRRTLQKNDI AAAISRTDTF 60 DFLVDIGCWA WASAGWCAVL LPSVGPAASG WGNAW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-37	1	66	27	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	47	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576949.1	1e-39	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X1
Refseq	XP_016576950.1	1e-39	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
Swissprot	Q8LCG7	9e-38	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A2G2ZCS4	2e-63	A0A2G2ZCS4_CAPAN; Nuclear transcription factor Y subunit C-3
STRING	POPTR_0005s09770.1	5e-37	(Populus trichocarpa)
STRING	POPTR_0007s07830.1	5e-37	(Populus trichocarpa)
STRING	cassava4.1_014024m	5e-37	(Manihot esculenta)
STRING	XP_010060857.1	6e-37	(Eucalyptus grandis)
STRING	EFJ16176	3e-37	(Selaginella moellendorffii)
STRING	EFJ17045	3e-37	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17621	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-39	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]