PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g20470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 205aa MW: 22228.2 Da PI: 4.6013 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 166.5 | 3.3e-52 | 1 | 102 | 4 | 102 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +fw++q ie+atdfknh+lPlarikki+kadedv+misae+Pvl++kace+fi eltlrswlhaeenkrrtl+++diaaa++rtd+fdflvdi+prd CA06g20470 1 MFWNYQrqeIEQATDFKNHQLPLARIKKIMKADEDVRMISAETPVLFAKACEIFIQELTLRSWLHAEENKRRTLQQNDIAAAISRTDTFDFLVDIIPRD 99 6999887789***************************************************************************************** PP NF-YC 100 elk 102 e+k CA06g20470 100 EVK 102 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.19E-31 | 7 | 92 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-20 | 20 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.0E-37 | 21 | 98 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MFWNYQRQEI EQATDFKNHQ LPLARIKKIM KADEDVRMIS AETPVLFAKA CEIFIQELTL 60 RSWLHAEENK RRTLQQNDIA AAISRTDTFD FLVDIIPRDE VKDEGVGLGL APGGVPYYYP 120 PLGQPAPGGV ILGRPAVPAG AVPGVVPGAV PDVVPGSVPG ADPSMYVPHL PFQVWQSMWQ 180 TSEDHSYPSG GGSSSGQATD DGQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-52 | 6 | 98 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576950.1 | 1e-150 | PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
Swissprot | Q9SMP0 | 2e-80 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A1U8H0P6 | 1e-149 | A0A1U8H0P6_CAPAN; nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
STRING | Solyc06g072040.1.1 | 4e-98 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4087 | 21 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 5e-67 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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