PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g19980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36977.5 Da PI: 6.8522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ede+l+++++++G g+W+++++ g+ R++k+c++rw +yl CA06g19980 14 RGLWSPDEDEKLYNYITRFGVGCWSSVPKLSGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE++ ++ +++ lG++ W+ Ia++++ gRt++++k++w++yl CA06g19980 67 RGTFSLEEEDMIITLHEVLGNR-WAQIAAKLP-GRTDNEIKNYWNSYL 112 899*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.342 | 9 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 9 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.07E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.973 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.69E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRHSVYVKE KLRRGLWSPD EDEKLYNYIT RFGVGCWSSV PKLSGLQRCG KSCRLRWINY 60 LRPDLKRGTF SLEEEDMIIT LHEVLGNRWA QIAAKLPGRT DNEIKNYWNS YLKKKLIKQG 120 IDPITHKPLS ENHQVRNDTN CTDKASMLLM SKFPNMSNSV EIEQPFHFNK RIFNSEAITR 180 QLTEVSRNQL VSKQVFDPLF LYDFQANMNP IGPYDGNQDF GICSMPNLTN FEHGHMTESD 240 FSDSSTSRMS TSNRTNTMIR HHSSAGIHQM NEMLENSQEL TWDADNKIDS LFEYPYDGIK 300 NEEDFSNNNN NNNPLSSLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-126 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016578263.1 | 0.0 | PREDICTED: myb-related protein 315-like isoform X1 | ||||
TrEMBL | A0A1U8HAV9 | 0.0 | A0A1U8HAV9_CAPAN; Transcription factor MYB32 | ||||
TrEMBL | A0A2G2Y0M0 | 0.0 | A0A2G2Y0M0_CAPAN; myb-related protein 315-like isoform X1 | ||||
STRING | PGSC0003DMT400069644 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 7e-76 | myb domain protein 50 |