PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g19170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 572aa    MW: 62746.8 Da    PI: 7.9464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g19170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30210269159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  CA06g19170 210 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCAEDMSILITTYEGTHNHT 269
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-32195271IPR003657WRKY domain
SuperFamilySSF1182901.83E-27203271IPR003657WRKY domain
PROSITE profilePS5081128.001205271IPR003657WRKY domain
SMARTSM007741.5E-36210270IPR003657WRKY domain
PfamPF031068.9E-27211268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MVKRERSPPE LNSMASSSAH KEKDDQLALA KVEMREVMEE NQRLRFHLDR IMKEYRNLQN  60
QFHDIVQREV DQKSSSTVNT TQHESDHETN ELVSLSLGRA TSDMKKEELS KILKKDKGRD  120
DEDVNKSLDL GLDCKFEECS PVKNRSPENS LDDHQANKDE NGETSTTTWP PNKNLKTMRN  180
DGDNGDDVSQ QNPTKRARVS VRVRCDAPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP  240
NCPVRKQVQR CAEDMSILIT TYEGTHNHTL PLSATAMAST TSAAANMLLS GSSSSSDPSP  300
QITATTTNTA TATTSANING LNFYISDTSK HKSPFYFPNS SISASTLNNS HPTITLDLTS  360
TSSSSSSSLS HLNRMSNNLH PRYNYNNSST NLNFSSVLES NSLPISWTNY QNQTCNKNNQ  420
NFGSLNFSSR PNQENIFQSY LQKNNNIIPT QSSFPPDTIA AATKAITSDP NFHSALAAAL  480
TSIIGNTGIE NKPGHNFNVS EPFPVLSSLP SSSNPNKCSS SFLNKPTSSS ANNSSQQPGN  540
NNNLVFFAQS SSSSLPFSTS NKGKSTSPSD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20197271174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIn association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0174220.0GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576975.10.0PREDICTED: probable WRKY transcription factor 61
SwissprotD8VNC60.0WK72B_SOLLC; WRKY transcription factor 72B
TrEMBLA0A1U8H0S00.0A0A1U8H0S0_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZCE20.0A0A2G2ZCE2_CAPAN; probable WRKY transcription factor 61
STRINGSolyc06g070990.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-63WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]