PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g18840

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 483aa MW: 52545.5 Da PI: 6.1042

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g18840	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.3	1.3e-36	130	188	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ CA06g18840 130 PDKILPCPRCNSSDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKN 188 7899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	127	187	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.7E-31	132	188	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.885	134	188	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:2.20.25.10	9.1E-4	134	172	No hit	No description
PROSITE pattern	PS01361	0	136	172	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MTCDSEIKLF GKILPVVVSV ECDVAGGTSS GGDGDRCLED GKASSADEGS ENENQGADKD 60 DLTGELNEAK FEEGDQSQMM EESENPRTLS ESENSSKSPT DEDSQAVKTS GTENEPTNVT 120 NSEQNSLKKP DKILPCPRCN SSDTKFCYYN NNNVNQPRHF CRSCQRYWTA GGTMRNLPVG 180 AGRRKNKNLA AHYRHISISE GLLAAGVESP NGLIHHPMFK PNGTILSFGT DLPLCESMAS 240 PLSQAEKRLS NGIQNGFHKA ELKNSSCKVG DTGDECYKGS NIPTPNVMVE EGKRELHKAV 300 MHNINGIPSP FPCLHGVPWP FTWNAAVPMP AICPIPFPMP FFPTPYWNCN VPPWSNPWLG 360 PALQAASEKT SGSDPTSPLG KHSREGDLLK PSNPRGKEQS EQKYSERSIL VPKTLRIDDP 420 DEAAKSSIWS TLGIKYDSAN RGEFFKALQP KSDDKHNKAN TPPVLHANPA ALSRSITFQQ 480 SA*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MTCDSEIKLF GKILPVVVSV ECDVAGGTSS GGDGDRCLED GKASSADEGS ENENQGADKD  60
DLTGELNEAK FEEGDQSQMM EESENPRTLS ESENSSKSPT DEDSQAVKTS GTENEPTNVT  120
NSEQNSLKKP DKILPCPRCN SSDTKFCYYN NNNVNQPRHF CRSCQRYWTA GGTMRNLPVG  180
AGRRKNKNLA AHYRHISISE GLLAAGVESP NGLIHHPMFK PNGTILSFGT DLPLCESMAS  240
PLSQAEKRLS NGIQNGFHKA ELKNSSCKVG DTGDECYKGS NIPTPNVMVE EGKRELHKAV  300
MHNINGIPSP FPCLHGVPWP FTWNAAVPMP AICPIPFPMP FFPTPYWNCN VPPWSNPWLG  360
PALQAASEKT SGSDPTSPLG KHSREGDLLK PSNPRGKEQS EQKYSERSIL VPKTLRIDDP  420
DEAAKSSIWS TLGIKYDSAN RGEFFKALQP KSDDKHNKAN TPPVLHANPA ALSRSITFQQ  480
SA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016569988.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A2G2ZCA3	0.0	A0A2G2ZCA3_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400083080	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-86	cycling DOF factor 3