PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g18380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 311aa MW: 34362 Da PI: 8.3269 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.3 | 6.9e-31 | 60 | 167 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ +ak++i++l+ ++ +++s + + ++ s++++ CA06g18380 60 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDAAKHEIDKLPPLQMPPPSLShffniK--DHGLSNHHQDFVnstlretg 156 78*************************************************************88888433445432..22222222221123444545 PP TCP 89 ..........k 89 + CA06g18380 157 lfgkekwiatN 167 55443333320 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.486 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.0E-28 | 61 | 160 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MMNSRKQETD GGDTTNSTKI SSRTNSTTTS ATSTTPSSSS RQTWAGFKNP RIVRVSRTFG 60 GKDRHSKVCT VKGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLID AAKHEIDKLP 120 PLQMPPPSLS HFFNIKDHGL SNHHQDFVNS TLRETGLFGK EKWIATNHHE QESSSTDHFF 180 QPSSLPTAGM LNNNVMAFNN NNPLISHTWE PNSNLSLGPF GNYHTFSSSL QTDVFPSGSQ 240 LYFCPTAAAT TLSSLVPPSY NSHLNHFHPN SLVPTLQLIS APVNNNPTKG LNLQESDDHH 300 HDNHKEGSDS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 5e-88 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555862.1 | 0.0 | PREDICTED: transcription factor TCP17-like isoform X1 | ||||
Refseq | XP_016555863.1 | 0.0 | PREDICTED: transcription factor TCP17-like isoform X2 | ||||
TrEMBL | A0A1U8F964 | 0.0 | A0A1U8F964_CAPAN; transcription factor TCP17-like isoform X1 | ||||
TrEMBL | A0A1U8F966 | 0.0 | A0A1U8F966_CAPAN; Transcription factor TCP17 | ||||
TrEMBL | A0A2G2ZC90 | 0.0 | A0A2G2ZC90_CAPAN; transcription factor TCP17-like isoform X2 | ||||
STRING | PGSC0003DMT400010453 | 1e-110 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |