PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g18380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 311aa    MW: 34362 Da    PI: 8.3269
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g18380genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.36.9e-3160167389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg........ 88 
                 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ +ak++i++l+ ++ +++s +     +  ++  s++++           
  CA06g18380  60 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDAAKHEIDKLPPLQMPPPSLShffniK--DHGLSNHHQDFVnstlretg 156
                 78*************************************************************88888433445432..22222222221123444545 PP

         TCP  89 ..........k 89 
                           +
  CA06g18380 157 lfgkekwiatN 167
                 55443333320 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.48661119IPR017887Transcription factor TCP subgroup
PfamPF036346.0E-2861160IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMNSRKQETD GGDTTNSTKI SSRTNSTTTS ATSTTPSSSS RQTWAGFKNP RIVRVSRTFG  60
GKDRHSKVCT VKGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLID AAKHEIDKLP  120
PLQMPPPSLS HFFNIKDHGL SNHHQDFVNS TLRETGLFGK EKWIATNHHE QESSSTDHFF  180
QPSSLPTAGM LNNNVMAFNN NNPLISHTWE PNSNLSLGPF GNYHTFSSSL QTDVFPSGSQ  240
LYFCPTAAAT TLSSLVPPSY NSHLNHFHPN SLVPTLQLIS APVNNNPTKG LNLQESDDHH  300
HDNHKEGSDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2066120155Putative transcription factor PCF6
5zkt_B5e-2066120155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754455e-88HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555862.10.0PREDICTED: transcription factor TCP17-like isoform X1
RefseqXP_016555863.10.0PREDICTED: transcription factor TCP17-like isoform X2
TrEMBLA0A1U8F9640.0A0A1U8F964_CAPAN; transcription factor TCP17-like isoform X1
TrEMBLA0A1U8F9660.0A0A1U8F966_CAPAN; Transcription factor TCP17
TrEMBLA0A2G2ZC900.0A0A2G2ZC90_CAPAN; transcription factor TCP17-like isoform X2
STRINGPGSC0003DMT4000104531e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5