PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g18250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Dof | ||||||||
Protein Properties | Length: 177aa MW: 19459.4 Da PI: 9.032 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.7 | 1.2e-38 | 30 | 89 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprC s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k++ CA06g18250 30 NHQALKCPRCGSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRA 89 67899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-24 | 31 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-33 | 32 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.441 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQDIHPIGGG GGRFYGGGGD RRLRPNNHQN HQALKCPRCG SLNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSKRAK LKSSSINAVA EVAEAQEEQK SDTNSSSESS 120 SLTATXCSSC GSRSDGHGEY FRWCNDGGCV CNFFQLGFNL SQLSGFIELL HTSQYY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 18 | GGRFYGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555899.1 | 2e-88 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
Swissprot | Q8LDR0 | 3e-38 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A2G2ZC35 | 1e-126 | A0A2G2ZC35_CAPAN; Dof zinc finger protein DOF5.4 | ||||
STRING | cassava4.1_011733m | 1e-52 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-32 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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