PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g17870

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 318aa MW: 36117.3 Da PI: 6.4248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g17870	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.8	6.8e-56	5	132	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+deel+++yL +kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs++d+ky+tg r+nrat++gyWk+tgkdkev++ + +l CA06g17870 5 LPPGFRFHPSDEELITYYLSNKVSDFNFTC-RAIADVDLNKSEPWDLPAKASMGEKEWYFFSQKDRKYPTGLRTNRATEAGYWKTTGKDKEVYRGGVHL 102 79************************99.89***********999999************************************99999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grapkgekt+Wvmheyrle CA06g17870 103 VGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 132 **************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-63	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	59.657	5	152	IPR003441	NAC domain
Pfam	PF02365	5.4E-29	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MEENLPPGFR FHPSDEELIT YYLSNKVSDF NFTCRAIADV DLNKSEPWDL PAKASMGEKE 60 WYFFSQKDRK YPTGLRTNRA TEAGYWKTTG KDKEVYRGGV HLVGMKKTLV FYRGRAPKGE 120 KTNWVMHEYR LETNLGFKPS KEEWVVCRVF HKNSTAKKPQ PTSSSQQSDH EDQSTCDTYH 180 HTLPNEFGDM DLTNNFNLAT PIGNGSLTNI SLHNYSNIQE NMNIMNLAAL PSVNSLLFRA 240 LQLRGNFNNQ PRDDIIPATT ITSTSNYPFN IQPQGTISAF GVDFDPVLEP PSSSHVVFNP 300 LQPQGEQSYK LDSNIWE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-56	4	158	19	174	NAC domain-containing protein 19
3swm_B	2e-56	4	158	19	174	NAC domain-containing protein 19
3swm_C	2e-56	4	158	19	174	NAC domain-containing protein 19
3swm_D	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_A	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_B	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_C	2e-56	4	158	19	174	NAC domain-containing protein 19
3swp_D	2e-56	4	158	19	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016555864.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3
Swissprot	Q9FK44	2e-79	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1U8FHS2	0.0	A0A1U8FHS2_CAPAN; NAC domain-containing protein 77
TrEMBL	A0A2G2ZC12	0.0	A0A2G2ZC12_CAPAN; protein CUP-SHAPED COTYLEDON 3
STRING	PGSC0003DMT400074048	1e-151	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-101	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]