PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g17870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 36117.3 Da PI: 6.4248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.8 | 6.8e-56 | 5 | 132 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+deel+++yL +kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs++d+ky+tg r+nrat++gyWk+tgkdkev++ + +l CA06g17870 5 LPPGFRFHPSDEELITYYLSNKVSDFNFTC-RAIADVDLNKSEPWDLPAKASMGEKEWYFFSQKDRKYPTGLRTNRATEAGYWKTTGKDKEVYRGGVHL 102 79**************************99.89***************999999****************************************99999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grapkgekt+Wvmheyrle CA06g17870 103 VGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 132 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-63 | 3 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.657 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-29 | 6 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEENLPPGFR FHPSDEELIT YYLSNKVSDF NFTCRAIADV DLNKSEPWDL PAKASMGEKE 60 WYFFSQKDRK YPTGLRTNRA TEAGYWKTTG KDKEVYRGGV HLVGMKKTLV FYRGRAPKGE 120 KTNWVMHEYR LETNLGFKPS KEEWVVCRVF HKNSTAKKPQ PTSSSQQSDH EDQSTCDTYH 180 HTLPNEFGDM DLTNNFNLAT PIGNGSLTNI SLHNYSNIQE NMNIMNLAAL PSVNSLLFRA 240 LQLRGNFNNQ PRDDIIPATT ITSTSNYPFN IQPQGTISAF GVDFDPVLEP PSSSHVVFNP 300 LQPQGEQSYK LDSNIWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555864.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9FK44 | 2e-79 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A1U8FHS2 | 0.0 | A0A1U8FHS2_CAPAN; NAC domain-containing protein 77 | ||||
TrEMBL | A0A2G2ZC12 | 0.0 | A0A2G2ZC12_CAPAN; protein CUP-SHAPED COTYLEDON 3 | ||||
STRING | PGSC0003DMT400074048 | 1e-151 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-101 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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