PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g16490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23002.1 Da PI: 10.1698 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.4 | 1.1e-07 | 110 | 152 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rrRR+ri +++ L++l+P ++ a++L +A +Y+k L CA06g16490 110 AAARRRRERISERIRVLQKLVPGG-----SNMDTASMLDEAANYLKFL 152 567*******************95.....48***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.786 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-14 | 108 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-12 | 109 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-12 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-5 | 111 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MERKEHVSIG PSHISTRDYG SQLIAGNDQP KSKKSRSEYK HPSSSNLNFH QASSSACSVD 60 EPDAEAIAHM KEMIYRAAAL RPMSSINTEE VMAEKPKRKN VRISTDPQTA AARRRRERIS 120 ERIRVLQKLV PGGSNMDTAS MLDEAANYLK FLRTQVNALK AFGFNIDPII INNNFTSLSS 180 MPFNYPFPMQ PHFPLQNLNP IHHP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 115 | KRKNVRISTDPQTAAARRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554844.1 | 1e-117 | PREDICTED: transcription factor bHLH87-like | ||||
Refseq | XP_016554845.1 | 1e-117 | PREDICTED: transcription factor bHLH87-like | ||||
Swissprot | Q8S3D2 | 5e-61 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A2G2ZBG8 | 1e-149 | A0A2G2ZBG8_CAPAN; Transcription factor bHLH87 | ||||
STRING | PGSC0003DMT400012487 | 1e-112 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4350 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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