PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g14950

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 307aa MW: 32781.8 Da PI: 7.0167

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g14950	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.2	8.1e-40	37	152	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ + s +ss+ + s++ CA06g14950 37 VKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNISLRSSGTTISAPpsksaplfihgga 135 5899***************************************************************99976667776666433334444556666666 PP TCP 89 ................k 89 + CA06g14950 136 ttmlgfhhqlpgstfgQ 152 66666555555555541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-38	41	157	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.287	41	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEFRDSHNEN QDGGSSNNNN NTNNNDNNNK ALSTVVVKKP SKDRHTKVDG RGRRIRMPAL 60 CAARVFQLTR ELGHKSDGET IEWLLQQAEP SIIAATGTGT IPANFSTLNI SLRSSGTTIS 120 APPSKSAPLF IHGGATTMLG FHHQLPGSTF GQDPDENFMK KRYKEDTAGA GATSPSSSSA 180 KPERTGVQGT EPDQESKPGS SSYIPAPAII GGFELPGGGR FSPVQLGSMF LQQPQPVQQL 240 GLGVTETNMG MLASMNAYNN NNNNSSSSRG SGIDLGMNLE QHHHHHHQNQ PQNSDSGDEN 300 HKDSQS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574858.1	0.0	PREDICTED: transcription factor TCP8
TrEMBL	A0A2G2ZAX2	0.0	A0A2G2ZAX2_CAPAN; Transcription factor PCF3
STRING	PGSC0003DMT400067150	1e-148	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-55	TCP family protein