PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g14570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 22289.6 Da PI: 8.462 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 7 | 55 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + CA06g14570 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.41E-36 | 6 | 66 | No hit | No description |
SMART | SM00380 | 4.1E-40 | 7 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.14 | 7 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 7 | 56 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-21 | 7 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-34 | 7 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MARAQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYNPNMP QTSSSRLLST TLTAKLHKCY MASLQMTKTS AQEQKIAKNA PIQESVYAYE 120 MKQQMMLVPK PSVLLTHNHE EKPANLGVIR KVEDHVLEGI PQYVKPLEDD HIEQMIEELL 180 DYGSIEICSN VPSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 6 | 64 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY077626 | 0.0 | AY077626.1 Lycopersicon esculentum ethylene response factor 1 (ERF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577054.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 7e-73 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A1U8H9D0 | 1e-144 | A0A1U8H9D0_CAPAN; Ethylene-responsive transcription factor | ||||
TrEMBL | A0A2G2WKJ6 | 1e-144 | A0A2G2WKJ6_CAPBA; Ethylene-responsive transcription factor | ||||
TrEMBL | A0A2G2ZAP9 | 1e-144 | A0A2G2ZAP9_CAPAN; ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A0A2G3C7Y6 | 1e-144 | A0A2G3C7Y6_CAPCH; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400067218 | 1e-126 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-55 | ERF family protein |
Publications ? help Back to Top | |||
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