PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g13110

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 343aa MW: 38461.7 Da PI: 5.4452

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g13110	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.3	7.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yLk+k+++ ++el evi+ +d+yk++PwdLp k + +++ ewyfF++rdkky++g+r+nratksgyWkatgkd++v++ k CA06g13110 6 LPPGFRFHPTDEELVGYYLKRKTDELEIEL-EVIPVIDLYKFDPWDLPeKsFLPKRDMEWYFFCSRDKKYPNGSRTNRATKSGYWKATGKDRKVVC-KP 102 79**************************.99**********95344555788**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg +ktLvfy+grap g +tdWvmheyrl CA06g13110 103 AVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-61	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.234	6	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEGISLPPGF RFHPTDEELV GYYLKRKTDE LEIELEVIPV IDLYKFDPWD LPEKSFLPKR 60 DMEWYFFCSR DKKYPNGSRT NRATKSGYWK ATGKDRKVVC KPAVVGYRKT LVFYRGRAPL 120 GDRTDWVMHE YRLCDDASQG TPSFQGPFAL CRVTKRKNIS SKMSDVHGAT TFKQVECSSS 180 NEAFTSAVAS NEPLVLSDDI PTQTTYMSSD SNYSTPVNSP YQTTQIGNYD SAMRTNAANI 240 WMSQNMILDP SKECPQGRST SGNYSHVFSN STSCLPSDQY DFTSSSSFPN FGGEVVLSGD 300 LNGYGCVSPF SVHESYMKFY GNEDISDNGY NQNDSLGNAN PF*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEGISLPPGF RFHPTDEELV GYYLKRKTDE LEIELEVIPV IDLYKFDPWD LPEKSFLPKR  60
DMEWYFFCSR DKKYPNGSRT NRATKSGYWK ATGKDRKVVC KPAVVGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDASQG TPSFQGPFAL CRVTKRKNIS SKMSDVHGAT TFKQVECSSS  180
NEAFTSAVAS NEPLVLSDDI PTQTTYMSSD SNYSTPVNSP YQTTQIGNYD SAMRTNAANI  240
WMSQNMILDP SKECPQGRST SGNYSHVFSN STSCLPSDQY DFTSSSSFPN FGGEVVLSGD  300
LNGYGCVSPF SVHESYMKFY GNEDISDNGY NQNDSLGNAN PF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	4	162	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	4	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	4	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	4	162	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-51	4	162	15	171	NAC domain-containing protein 19
4dul_B	1e-51	4	162	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269\|PubMed:24285786, ECO:0000269\|PubMed:25182467}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269\|PubMed:24285786}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC158308	1e-150	KC158308.1 Solanum lycopersicum AFLP fragment TGG2, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577068.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9LS24	1e-89	NAC96_ARATH; NAC domain-containing protein 96
TrEMBL	A0A2G2ZAF7	0.0	A0A2G2ZAF7_CAPAN; NAC domain-containing protein 45
STRING	Solyc06g061080.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6256	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46590.1	6e-80	NAC domain containing protein 96

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]