PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g11310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33666.3 Da PI: 6.716 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.4e-52 | 9 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 ppGfrFhPtdeelv +yL++k++++++ + +++e+d+yk++PwdLp+ + +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++v CA06g11310 9 PPGFRFHPTDEELVIHYLCRKCTSQPIAV-PIVAEIDLYKFDPWDLPELALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGN--PKAV 104 9*************************999.88***************7656689*************************************98..778* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkgekt+W+mheyrl CA06g11310 105 GIKKALVFYAGKAPKGEKTNWIMHEYRL 132 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-62 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.287 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTGADLQFPP GFRFHPTDEE LVIHYLCRKC TSQPIAVPIV AEIDLYKFDP WDLPELALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGN PKAVGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLADVDRSAR KNNNSLRLDD WVLCRIYNKK GSIEKHRKMN TSYMDTVESP 180 EDKKPEILPP LPPQPPQQLH NDYFYLPSDS VPKIHSDSSC SEHVLSPDFT CEKEVQSEPK 240 LTEWEKITVD LPFNYMDATT GATTVDNSLL GSQFQSSYQM SPLQDMFMHL LKPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-82 | 4 | 165 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016575179.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-136 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2G2ZAB9 | 0.0 | A0A2G2ZAB9_CAPAN; NAC domain-containing protein 48 | ||||
STRING | Solyc06g060230.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-135 | NAC family protein |