PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g11200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21852 Da PI: 8.8217 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.7 | 1.2e-12 | 9 | 48 | 1 | 44 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 ++ykG+r +k +g+Wv+e+r p++ r r++lg+++tae+ ++ CA06g11200 9 PKYKGIRLRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKXRR 48 79******99.*******999833...5**********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.29E-14 | 9 | 61 | No hit | No description |
Pfam | PF00847 | 1.2E-6 | 9 | 46 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-7 | 10 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-16 | 10 | 48 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.722 | 10 | 53 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-10 | 10 | 48 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-7 | 11 | 22 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-7 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MENGGPSQPK YKGIRLRKWG KWVSEVRLPN SRERIWLGSY DTAEKXRRSS ASAGRKPSLT 60 FLIVRRTYLY PTDKGFRLRR YRLLQLVVQM DTNNNSTATA AMAWASFDMW EDYPHHAIGP 120 PPDLFCDPHS SYAGTNYDSG YYPAGVLDSL SSNLYSPPHF PQRVTHNYDD DDTGNGGDEH 180 YPQQSFLWNF * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 3e-45 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577117.1 | 1e-62 | PREDICTED: ethylene-responsive transcription factor ERF016-like | ||||
TrEMBL | A0A2G2Z9R2 | 1e-84 | A0A2G2Z9R2_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079094 | 4e-41 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-19 | ERF family protein |