PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g11170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 333aa    MW: 36571.3 Da    PI: 8.2093
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g11170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-082038826
                GGGGTS--TTTTT-SS-SS CS
     zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                +++ tG Ck+G+ Ck++H+
  CA06g11170 20 YYMMTGMCKFGAFCKYHHP 38
                8*****************8 PP
2zf-CCCH32.51.4e-106890426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                + C +++r+G+CkyG +CkF+H+
  CA06g11170 68 RKCLHYMRMGQCKYGITCKFHHP 90
                78********************9 PP
3zf-CCCH33.19.5e-11228253227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C++++++G+CkyG++C ++H+p
  CA06g11170 228 GQPECHYYMKFGECKYGSSCDYHHPP 253
                 789*********************97 PP
4zf-CCCH27.17e-09275297426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C++++  G+Ck+ ++CkF H+
  CA06g11170 275 PICSHYSLIGICKFAPSCKFDHP 297
                 68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00221139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7181140IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-52038IPR000571Zinc finger, CCCH-type
SMARTSM003560.00226591IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-56790IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-86790IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.7986992IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309226254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5227253IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7227253IPR000571Zinc finger, CCCH-type
SMARTSM003560.0049271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.657272299IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5275297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
LRATIGEHPE RFGLAVCQLY YMMTGMCKFG AFCKYHHPNQ GEGYPSLVRH NIHGYPLRPV  60
CLLFIYERKC LHYMRMGQCK YGITCKFHHP LLAGVQAPAS VAGSFPFLTG EPFPLPAAIP  120
HHPLIQHCIL LLPTLLSGSY LPSTYGPKHF PPEMVSMLDW IPSASGPVGS MFSKGDSSTA  180
VVGPVYGILQ LSASAPAYTE LYMCMSLSAS PGASRRIQKE FVFPERFGQP ECHYYMKFGE  240
CKYGSSCDYH HPPQFYWSSS SCTNSSFFMP HPCAPICSHY SLIGICKFAP SCKFDHPLGK  300
SYSPSASSLG DMPVAPYPVG TLAPSSSSSD FR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267356.11e-110PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A2G2YFA61e-116A0A2G2YFA6_CAPAN; Uncharacterized protein
STRINGXP_009802825.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1598556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-61C3H family protein