PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA06g08530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 25988.9 Da PI: 4.9329 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 5.8e-20 | 20 | 70 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq+++Le++F+++ ++ +++ eLA+ lgL++rqV +WFqNrRa++k CA06g08530 20 RFSDEQVKALESMFKQKTKLEPSKKLELARDLGLQTRQVAIWFQNRRARWK 70 69************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 113.3 | 1.6e-36 | 19 | 110 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk..dyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eqvk+LE++F++++kLep++K elar+Lglq+rqva+WFqnrRAR+ktkqlE+ +y+ Lk+++d+l+ + ++L+ke+e+L ++lke CA06g08530 19 KRFSDEQVKALESMFKQKTKLEPSKKLELARDLGLQTRQVAIWFQNRRARWKTKQLEHehEYRLLKAEFDNLAVQFDSLKKEKESLLKQLKE 110 8*******************************************************86225778*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.973 | 12 | 72 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-17 | 14 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-18 | 18 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 20 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.01E-15 | 20 | 73 | No hit | No description |
Pfam | PF00046 | 2.3E-17 | 20 | 70 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.6E-6 | 43 | 52 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 47 | 70 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 52 | 68 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.6E-11 | 72 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MEAEDGLAEC SKKKCEDGKR FSDEQVKALE SMFKQKTKLE PSKKLELARD LGLQTRQVAI 60 WFQNRRARWK TKQLEHEHEY RLLKAEFDNL AVQFDSLKKE KESLLKQLKE LNDHLESNHA 120 DCNRRQDSIG SEVYTSSENV GTELDLKDNI PGCLNESLDH ERIKGADSDR EGTFIEYFRC 180 KEVAEFWNME ELGDSSLGSP EHWYAVGQGG SFEPSCANSK WWEF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 64 | 72 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574650.1 | 1e-160 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A2G2Z9F5 | 1e-164 | A0A2G2Z9F5_CAPAN; Homeobox-leucine zipper protein HOX6 | ||||
STRING | PGSC0003DMT400013968 | 1e-112 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.2 | 1e-30 | homeobox 7 |