PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g07510
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 608aa    MW: 66601.1 Da    PI: 5.5616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g07510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS343.83e-1052406063373
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + ++++A+a+++g+++ a  +L+rls+ a  +g++ qRl+ay++ AL++r++          pp   +  +s+e++ + + ++e+sP++k+++++aN a
  CA06g07510 240 QSIVAAATAITDGKTNVAVDILTRLSQVADIRGSSEQRLTAYMVSALKSRVNF------TEYPPPVLE-LQSKEHAISAQNLYELSPCFKLGFMAANLA 331
                 67899***********************************************8......223333332.348888888899****************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ileav  +  +++H+iDfdi+qG+Q++ Ll+aLas++ ++p sl+iT++ +      ++++ +g+ L+ +A+++gv + fnv ++ +++dl+ e+L v+
  CA06g07510 332 ILEAVVDQpsDKIHVIDFDIGQGGQYLHLLHALASKKtDEPTSLKITAITDFMGRADDRVNLIGDDLRTLADKIGVCLVFNV-TSCKITDLSRERLGVE 429
                 *****99989************************99845566*********8777**************************9.899************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E+laVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv++veqe++ n++ F++r+ e+  yy al+dsl+a++++++  r+k+E+  l+r++vn
  CA06g07510 430 HDETLAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNETYGYYGALLDSLDATVSKDEMGRAKIEEG-LSRKVVN 527
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  vaceg++r+er+e ++kWr+r+++aGF+p p+s+++a++    l+  +  + g++v+e+sg +++gW++++L+++SaW
  CA06g07510 528 SVACEGRDRVERCEVFGKWRARMSMAGFGPRPMSQYIADSLLKRLNSDPrgNPGFTVNEQSGGICFGWMGKTLIVASAW 606
                 ************************************999987777666557899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.372212585IPR005202Transcription factor GRAS
PfamPF035141.0E-102240606IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MSSDYSGGIP DFYGGAGGIN TGRSTMIPMN HAQRSPLSGI LPEGAYQNLH RRQTFIGKRS  60
LADFQQQQQQ VQQGLGFYLR NVKPRSYQQA SPISPLVDFS SEFPSVSPIS VMNTRHALPI  120
IQTLRSQPVI PPANTNASEV LSSGNLNCSA VASYLNQVQN SLYQESEEKM MNRLQELEKE  180
LLEDSYGDEE DTGSIVTNNN EWSETIKNLI TPSSNHLSPA SSTSSCSSSI ESPTITSPKQ  240
SIVAAATAIT DGKTNVAVDI LTRLSQVADI RGSSEQRLTA YMVSALKSRV NFTEYPPPVL  300
ELQSKEHAIS AQNLYELSPC FKLGFMAANL AILEAVVDQP SDKIHVIDFD IGQGGQYLHL  360
LHALASKKTD EPTSLKITAI TDFMGRADDR VNLIGDDLRT LADKIGVCLV FNVTSCKITD  420
LSRERLGVEH DETLAVNFAY RLYRLPDESV TTENLRDELL RRVKGLSPKV VTLVEQELNG  480
NTAAFVARVN ETYGYYGALL DSLDATVSKD EMGRAKIEEG LSRKVVNSVA CEGRDRVERC  540
EVFGKWRARM SMAGFGPRPM SQYIADSLLK RLNSDPRGNP GFTVNEQSGG ICFGWMGKTL  600
IVASAWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-4027260637374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553928.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A1U8F3A00.0A0A1U8F3A0_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z8T70.0A0A2G2Z8T7_CAPAN; scarecrow-like protein 8
STRINGPGSC0003DMT4000769320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-148SCARECROW-like 8