PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g06970

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 378aa MW: 42504.9 Da PI: 9.4187

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g06970	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	3.1e-31	73	126	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF +ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ CA06g06970 73 PRLRWTPELHLRFAHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 126 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-29	69	127	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.897	69	129	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-15	70	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-22	73	128	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-10	74	125	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEGGSSSTEE SKLSPKNQIE FGEEEEGEDD LETEEKSKAQ GTTRTSSSNS TVEENGKKTN 60 SGSVRQYVRS KTPRLRWTPE LHLRFAHAVE RLGGQDRATP KLVLQLMNIK GLSIAHVKSH 120 LQMYRSKKTD DPSQISTDGR TLLENGDHHI FNLTQLPRLQ GYNQTSSSSL RYENALWSRQ 180 PNSMYNSYNV NIGGGSRTST RHGFASHING FSSDGQLFPW NKPIDTEKNQ NRPQFLQNQR 240 FWPTQIGISS AKQNLLMTLQ FNRNTVETAT QFNRREQEMM TQVRANISLS SSRGKGWTSE 300 EVAGTITSTS NKRKIHDSEI NLDLNLSLKA TREDHDDHLK RLKAEQVGDL LSLSLYSSST 360 NDQENNGKKA NTLDLTL*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEGGSSSTEE SKLSPKNQIE FGEEEEGEDD LETEEKSKAQ GTTRTSSSNS TVEENGKKTN  60
SGSVRQYVRS KTPRLRWTPE LHLRFAHAVE RLGGQDRATP KLVLQLMNIK GLSIAHVKSH  120
LQMYRSKKTD DPSQISTDGR TLLENGDHHI FNLTQLPRLQ GYNQTSSSSL RYENALWSRQ  180
PNSMYNSYNV NIGGGSRTST RHGFASHING FSSDGQLFPW NKPIDTEKNQ NRPQFLQNQR  240
FWPTQIGISS AKQNLLMTLQ FNRNTVETAT QFNRREQEMM TQVRANISLS SSRGKGWTSE  300
EVAGTITSTS NKRKIHDSEI NLDLNLSLKA TREDHDDHLK RLKAEQVGDL LSLSLYSSST  360
NDQENNGKKA NTLDLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	8e-72	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577168.1	0.0	PREDICTED: putative two-component response regulator ARR13 isoform X2
TrEMBL	A0A1U8H7W2	0.0	A0A1U8H7W2_CAPAN; putative two-component response regulator ARR13 isoform X2
STRING	XP_009791663.1	1e-166	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-50	G2-like family protein