PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g06960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-X1
Protein Properties Length: 419aa    MW: 46597 Da    PI: 8.0403
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g06960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1231.7e-07227244320
    zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                  H+C+++CHeG+CppC++
  CA06g06960 227 THRCSEICHEGDCPPCKA 244
                 5***************95 PP
2zf-NF-X121.54.9e-07278297120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG+HkC+k CHeG+C+ Cp+
  CA06g06960 278 CGRHKCEKGCHEGDCGDCPL 297
                 ******************95 PP
3zf-NF-X119.22.6e-06385404120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG+H C++ C+ G+CppC++
  CA06g06960 385 CGRHACKRRCCDGDCPPCSE 404
                 ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.89E-763134No hitNo description
PROSITE profilePS500898.5864128IPR001841Zinc finger, RING-type
PROSITE patternPS01359064127IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.64E-6161209No hitNo description
PfamPF014220.031173190IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072173191IPR000967Zinc finger, NF-X1-type
CDDcd060081.24E-7215263No hitNo description
PfamPF014221.1E-4225243IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9E-4225244IPR000967Zinc finger, NF-X1-type
CDDcd060086.15E-10268311No hitNo description
PfamPF014222.1E-4278296IPR000967Zinc finger, NF-X1-type
SMARTSM004388.7E-4278297IPR000967Zinc finger, NF-X1-type
CDDcd060081.88E-9322371No hitNo description
PfamPF014220.0022332351IPR000967Zinc finger, NF-X1-type
SMARTSM004380.055332352IPR000967Zinc finger, NF-X1-type
CDDcd060085.72E-5375406No hitNo description
PfamPF014223.6E-4385403IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092385404IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTSTVAPTLS NSDSDSSHCH HHSDLSSTIF KSYLELSGEQ QNEKHDLIKI QAFLTSSRSG  60
ALSCLICLER IRPSDPTWSC SSLCFAVFHL HCIQSWAVQS SNLAAARAAT RAATPNESSL  120
LWHCPKCRIE YPKSQIPKTY YCFCGKLPDP PHDPWVLPHS CGEICGRPLK YNCGHHCLLL  180
CHPGPCPSCP KLVKSKCFCG ALEDVKRCGF KNFSCNGICK NLLDCNTHRC SEICHEGDCP  240
PCKAKGMFKC QCGKVEMKRE CFDRVFRCEN PCDKLLGCGR HKCEKGCHEG DCGDCPLQGK  300
RTCPCGKRVY EGIACDVAVL VCGATCGKML SCGFHRCPER CHRGPCIETC RVVVTKSCRC  360
GSFMKLVPCY QDMTCERKCQ KMRDCGRHAC KRRCCDGDCP PCSEVCSYFD NFVNYYYS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575561.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2G2WI940.0A0A2G2WI94_CAPBA; NF-X1-type zinc finger protein NFXL2
STRINGSolyc06g051570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-174sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors