PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g06580
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 209aa    MW: 22378.3 Da    PI: 4.2419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g06580genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.5e-164088255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +kG+r +  +g+Wv+eIr+p++   ++r++lg+f tae+Aa+a++ a+++l+g
  CA06g06580 40 NFKGIRMR--NGKWVSEIREPRK---TTRIWLGTFPTAEMAAAAYDVAALALKG 88
                589**975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.8372896IPR001471AP2/ERF domain
PfamPF008471.6E-93988IPR001471AP2/ERF domain
CDDcd000181.56E-183997No hitNo description
Gene3DG3DSA:3.30.730.101.5E-274097IPR001471AP2/ERF domain
SMARTSM003805.4E-2940104IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-184197IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MADYPFNVIP SDNPPPLENL SPSGGSASSS GVLSPRRHPN FKGIRMRNGK WVSEIREPRK  60
TTRIWLGTFP TAEMAAAAYD VAALALKGPD AQLNFPDCAS LYPMPTSLSA ADIYAAXXXX  120
XXAARAPRPS ESSTADQAPD QTAGISEGTV AASAQGQEFV DEEEIFGMPR LLDDMAEAML  180
VSPPRMHQST SYDESPENSD ADSLWSYP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754456e-31HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340524.13e-91PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ902e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2G2Z8P31e-144A0A2G2Z8P3_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000650671e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-47ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]