PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g06410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 348aa    MW: 40193.1 Da    PI: 6.6308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g06410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.9e-5371361129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeelv++yL+kk+++++++l +vik++d+yk+ePwdL++  ++ aee+ +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k
  CA06g06410   7 VPPGFRFHPTDEELVDYYLRKKITSRRIDL-DVIKDIDLYKIEPWDLQElcRMGAEEQsDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-K 103
                 69****************************.9***************954555554445**************************************.8 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                 + l+g++ktLv+ykgrap+g+k+d +mheyrle
  CA06g06410 104 HDLIGMRKTLVYYKGRAPNGQKSDFIMHEYRLE 136
                 899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-585156IPR003441NAC domain
PROSITE profilePS5100556.8667156IPR003441NAC domain
PfamPF023653.7E-278135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNSLSHVPPG FRFHPTDEEL VDYYLRKKIT SRRIDLDVIK DIDLYKIEPW DLQELCRMGA  60
EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVYYKGRA  120
PNGQKSDFIM HEYRLETDPN GAPQEEGWVI CRVFKKKIAA GMRMDTSEHG SPIWYDDQLS  180
FMQDMDSPKL IHPQINYNHY PNNYPNFKKE LDNLHYQIPP HNPHHQFLQQ LPLLETNSKL  240
VAKPPGCSSM PIFGNLNVNR PALLTQEHVH PTFANNDNQV ADQVTDWRVL DKFVASQLSQ  300
EDENNNYSPN APNTFQVTGD DMNLNKQEMA PENTSTASSS SQIDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-48615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-124HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577175.10.0PREDICTED: NAC domain-containing protein 7-like isoform X1
RefseqXP_016577177.10.0PREDICTED: NAC domain-containing protein 7-like isoform X1
RefseqXP_016577178.10.0PREDICTED: NAC domain-containing protein 7-like isoform X1
RefseqXP_016577179.10.0PREDICTED: NAC domain-containing protein 7-like isoform X1
SwissprotQ9FWX21e-134NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1U8H1440.0A0A1U8H144_CAPAN; NAC domain-containing protein 7
TrEMBLA0A1U8H9S70.0A0A1U8H9S7_CAPAN; NAC domain-containing protein 7-like isoform X1
TrEMBLA0A2G3C6330.0A0A2G3C633_CAPCH; NAC domain-containing protein 7
STRINGSolyc06g034340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-118NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]