PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g04310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 10309.2 Da PI: 10.2459 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.2 | 2.4e-14 | 5 | 44 | 5 | 44 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 n+s + sk ++ ++KKA+ELS+LC++eva+iifs g CA06g04310 5 NSSVEGIKMSKMQKSLFKKANELSILCGTEVAIIIFSIGG 44 666666778999************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-4 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.119 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.03E-15 | 12 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-13 | 13 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-7 | 15 | 30 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-7 | 30 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MERKNSSVEG IKMSKMQKSL FKKANELSIL CGTEVAIIIF SIGGQPVLFG KPDVESVVYH 60 FMEAKHPAAL RNYMKMKKKE EEKKGERKIY * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016578811.1 | 1e-29 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2G2Z7V6 | 3e-58 | A0A2G2Z7V6_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085930 | 3e-28 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-14 | AGAMOUS-like 29 |