PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g03930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 28078.6 Da PI: 8.0376 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 5.7e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +v+++G ++W+ a+ g++Rt+k+c++rw +yl CA06g03930 8 KGPWTEQEDLQLAFYVNLFGDRRWDFLAKVSGLRRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+++++ ++G++ W++Ia +++ gRt++++k++w++++ CA06g03930 61 RGKMTPQEERLILELHSKWGNR-WSKIAMKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.439 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.33E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 27.515 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-17 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-16 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAQEEMRKGP WTEQEDLQLA FYVNLFGDRR WDFLAKVSGL RRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LILELHSKWG NRWSKIAMKL PGRTDNEIKN YWRTHMRKKA QDERKNKAST 120 ISPSSSFSNS SSFYSNSPDV DFTPIMENNE RNFYDTGGVE KKINDGGKMK VYSMDEIWKD 180 IELSEESETM NNIKPIMSSP LWNYCPNNTL WMSDEEETKM FPQFYNCLDN QDNTFFAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-28 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 8e-28 | 5 | 110 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-151 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577226.1 | 1e-177 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q4JL84 | 3e-75 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A2G2Z7N5 | 1e-178 | A0A2G2Z7N5_CAPAN; Transcription factor MYB48 | ||||
TrEMBL | A0A2G3C4S8 | 1e-178 | A0A2G3C4S8_CAPCH; Transcription factor MYB48 | ||||
STRING | XP_009770621.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-76 | myb domain protein 59 |
Publications ? help Back to Top | |||
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