PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g01680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33396.7 Da PI: 6.2419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.4 | 6.9e-50 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF P+deel+++yL kk++++++ ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWkatgkd++v++ +ge CA06g01680 10 LPPGFRFYPSDEELICHYLYKKIANQEVIK-GTLIEIDLHTCEPWQLPEVAKLNSNEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVFDPqTGE 107 79************************9555.6799*************88888999*************************************987889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l+g++ktLvfyk+rap+g kt W+mhe+r+ CA06g01680 108 LIGMRKTLVFYKNRAPHGIKTGWIMHEFRI 137 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.784 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGLRDIGSTL PPGFRFYPSD EELICHYLYK KIANQEVIKG TLIEIDLHTC EPWQLPEVAK 60 LNSNEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV FDPQTGELIG MRKTLVFYKN 120 RAPHGIKTGW IMHEFRIENP HIPPKEDWVL CRVFHKGTKD ENINSTNKLS PKNMYEASVT 180 SINIMDNHEA TMPKLLPYGE AGYRPSTALS FSNNSIHQSQ NSSNLQLSQE INYKALANEM 240 IHSKCGKEDE FGFLFDMNYF EESNLQDGGV INSCLDGDMK FEDENSLVFI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-105 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-105 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576082.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 2e-64 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2G2Z6X9 | 0.0 | A0A2G2Z6X9_CAPAN; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | PGSC0003DMT400065559 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-91 | NAC domain containing protein 74 |