PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g00320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 34084 Da PI: 4.4817 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l +++ G g+W++ ++ g+ R++k+c++rw +yl CA06g00320 14 KGRWTKEEDEILTNYILANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.2e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+ +++++ + lG++ W+ Ia++++ gRt++++k++w++ CA06g00320 67 RGNITSDEEAIIIKLRATLGNR-WSVIAEYLP-GRTDNEIKNYWNS 110 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.966 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.77E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.09E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 21.279 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-12 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-8 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRTPCCEKV GLRKGRWTKE EDEILTNYIL ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LKTDLKRGNI TSDEEAIIIK LRATLGNRWS VIAEYLPGRT DNEIKNYWNS RLSRKVESLR 120 IPSDEKLPLA VVEMAKNKGI QEQIVKRQRR KRKADSNFMT ETSVSTSSCY NNNNNNNNND 180 DDVVLMDDKD AELDQDFIFN CLWDCEGEDL EIVENNNNEV LSNDNYDQLD CWNWEQLDEI 240 LANEEATRQE IDNNMSHISL FDINDNVQNC MNQQEVPIEN VHPMQSDLVA WLLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 2e-44 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555562.1 | 0.0 | PREDICTED: transcription factor MYB12-like | ||||
Swissprot | Q9FJ07 | 6e-68 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | A0A1U8F8B8 | 0.0 | A0A1U8F8B8_CAPAN; transcription factor MYB12-like | ||||
STRING | PGSC0003DMT400018841 | 1e-137 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-67 | myb domain protein 111 |