PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA05g20340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 66aa MW: 7527.69 Da PI: 9.605 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89 | 4.2e-28 | 1 | 49 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWtpeLHe Fvea+++LG +AtPk +l++m+v+gLt++hvkSHLQkYR+ CA05g20340 1 MRWTPELHEVFVEAISKLG---EATPKGVLKIMNVEGLTIYHVKSHLQKYRT 49 79****************4...79***************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 1 | 51 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.472 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.93E-16 | 1 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-10 | 1 | 48 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 9.4E-23 | 1 | 49 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 66 aa Download sequence Send to blast |
MRWTPELHEV FVEAISKLGE ATPKGVLKIM NVEGLTIYHV KSHLQKYRTA RYKPEPSEGR 60 NFLSD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-27 | 1 | 53 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:11511543, PubMed:17927693, PubMed:26586833). Binds as a dimer to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:11511543, PubMed:20838596, PubMed:26586833). SPX1 is a competitive inhibitor of this DNA-binding (PubMed:25271326). PHR1 binding to its targets is low Pi-dependent (PubMed:25271326). Regulates the expression of miR399 (PubMed:20838596). Regulates the expression of IPS1 (At3g09922), a non-coding RNA that mimics the target of miR399 to block the cleavage of PHO2 under Pi-deficient conditions (PubMed:17643101). Regulates lipid remodeling and triacylglycerol accumulation during phosphorus starvation (PubMed:25680792). Required for the shoot-specific hypoxic response (PubMed:24753539). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). Contributes to the homeostasis of both sulfate and phosphate in plants under phosphate deficiency (PubMed:21261953). Required for adaptation to high light and retaining functional photosynthesis during phosphate starvation (PubMed:21910737). Involved in the coregulation of Zn and Pi homeostasis (PubMed:24420568). {ECO:0000269|PubMed:11511543, ECO:0000269|PubMed:17643101, ECO:0000269|PubMed:17927693, ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:21261953, ECO:0000269|PubMed:21910737, ECO:0000269|PubMed:23788639, ECO:0000269|PubMed:24420568, ECO:0000269|PubMed:24753539, ECO:0000269|PubMed:25271326, ECO:0000269|PubMed:25680792, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Only moderately up-regulated by Pi starvation. {ECO:0000269|PubMed:11511543}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016573871.1 | 3e-32 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_016573872.1 | 3e-32 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q94CL7 | 4e-29 | PHR1_ARATH; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A2G2ZKV1 | 2e-32 | A0A2G2ZKV1_CAPAN; Protein PHR1-LIKE 1 | ||||
STRING | PGSC0003DMT400060324 | 2e-31 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12062 | 16 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-31 | phosphate starvation response 1 |