PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g19360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21960.3 Da PI: 5.6322 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.2 | 2.1e-14 | 101 | 145 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky CA05g19360 101 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVSRTPTQVASHAQKY 145 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.9 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 7.664 | 1 | 48 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 3.16E-9 | 4 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.57E-5 | 4 | 46 | No hit | No description |
PROSITE profile | PS51294 | 22.464 | 94 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-17 | 96 | 150 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-18 | 97 | 149 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.7E-12 | 98 | 148 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-12 | 98 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-10 | 101 | 146 | No hit | No description |
Pfam | PF00249 | 3.5E-12 | 101 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSIWSRNDDK LFENALVLYP ENIADRFQLI ADYVPGKSID DIMAHYDDLV HDVFEIDSGR 60 IEFPGYTDDD SGRVELEGHS GRVELEGDSG RVSAERKKGT PWTEEEHRLF LIGLEKYGKG 120 DWRSISRNVV VSRTPTQVAS HAQKYFIRQQ AMKKERKRSS IHDITTAVDT NTVPPQSSLQ 180 NQRGTQNFNF AQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ243339 | 1e-109 | AJ243339.1 Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016573777.1 | 1e-142 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-56 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1U8GR70 | 1e-141 | A0A1U8GR70_CAPAN; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2G2ZKM7 | 1e-141 | A0A2G2ZKM7_CAPAN; transcription factor DIVARICATA-like | ||||
STRING | PGSC0003DMT400060403 | 1e-107 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-67 | MYB family protein |
Publications ? help Back to Top | |||
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