PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g18760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 150aa MW: 17032.2 Da PI: 10.0121 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H CA05g18760 22 FECKTCNRQFSSFQALGGHRASH 44 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.39E-9 | 20 | 89 | No hit | No description |
Pfam | PF13912 | 9.3E-13 | 21 | 46 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 22 | 49 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 67 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-10 | 67 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MLFSHQQNHF DTSMTNSPGK VFECKTCNRQ FSSFQALGGH RASHKKPRLM GELNFQMPIS 60 PPKPKIHECS ICGLEFPIGQ ALGGHMRRHR GMLNENNSSN NIHQVPHHVV KKLSNSTPRA 120 LCLDLNLTPL ENDLXISYRT SFRWTYEKT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-119 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574797.1 | 2e-96 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 2e-31 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A2G2ZKB7 | 1e-103 | A0A2G2ZKB7_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060523 | 1e-72 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-34 | C2H2 family protein |