PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g18640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Dof | ||||||||
Protein Properties | Length: 234aa MW: 26775.8 Da PI: 10.1859 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 7.3e-39 | 13 | 73 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+s CA05g18640 13 PENALKCPRCASTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRS 73 7899*****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 1 | 66 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-32 | 15 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.45 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 19 | 55 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MTERARLAKI PQPENALKCP RCASTNTKFC YYNNYNLSQP RHFCKTCRRY WTRGGALRNV 60 PVGGGCRRNN KRSSKRSRST KSPNRSDQRS RNNVPTISTS TITFPSHLPL PNTSTHLSFL 120 NTPFHNLNDF NSTQNDMNFG EIQSHEGDGR FIDQFRLQQM QQFSFFPPLE QQPSNLYPIS 180 EFGISHDLEN VKVEENKSSI NSQGMNLQRN NTLGVNQFWI DYNISSTSTS QLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574549.1 | 1e-173 | PREDICTED: dof zinc finger protein DOF3.6 | ||||
Swissprot | Q9M2U1 | 3e-52 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A1U8H2B1 | 1e-171 | A0A1U8H2B1_CAPAN; dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A2G2ZKD6 | 1e-172 | A0A2G2ZKD6_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060216 | 1e-117 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 4e-47 | OBF-binding protein 3 |