PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g18430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 44687.7 Da PI: 4.7414 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEdellv++++ G g+W++ ++ g+ R++k+c++rw +yl CA05g18430 13 RGKWTIEEDELLVKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWTNYL 60 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.4e-18 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde +v+++ lG++ W++Ia+ ++ gRt++++k++w++ CA05g18430 66 RGKFTAEEDETIVKLHSTLGNR-WSLIAQDLP-GRTDNEIKNYWNSN 110 89********************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.979 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.84E-8 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.647 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-17 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MKAPCCEKVG LKRGKWTIEE DELLVKYIQA NGEGSWRSLP KNAGLLRCGK SCRLRWTNYL 60 RPNLKRGKFT AEEDETIVKL HSTLGNRWSL IAQDLPGRTD NEIKNYWNSN LRRRLYSFRN 120 FKELIKTTTN VPKIAVDGDS DESLRKQDTS TMSKEGSIES LLPEDNIVVD RGSTRKNRSL 180 CVGSNEGATW SEGDSTESLL PENCTVDIGS MRKPYSSCPR GKDDVPWYRE GSTESLLLEN 240 IEINFACEEN SIGSLLMENC SSPGGRDDTS WFEEGGSFKS LLLENIETNF SCPKGTCNAT 300 WSEGGSVEFF SLENCVVDLG SNRENKPVWS DKGGSIEYLL TENYTVDIGF NRETNSSSCP 360 RGNAKAMWYE EGSSIESSST ESYIVDLGKT SQTSSILINV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-26 | 11 | 115 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 11 | 115 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574541.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1U8GTF1 | 0.0 | A0A1U8GTF1_CAPAN; transcription factor MYB108-like | ||||
STRING | PGSC0003DMT400060236 | 1e-153 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 4e-64 | myb domain protein 111 |