PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g18400
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 192aa    MW: 20529.4 Da    PI: 10.7317
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g18400genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-182357135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  CA05g18400 23 CVDCGTSKTPLWRGGPTGPKSLCNACGIKSRKKRR 57
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-141774IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6111753IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-121856No hitNo description
Gene3DG3DSA:3.30.50.104.1E-152257IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.66E-112272No hitNo description
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
PfamPF003202.3E-162357IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSSETTSPVK SSPETSQSNV KTCVDCGTSK TPLWRGGPTG PKSLCNACGI KSRKKRRALL  60
GLDKEDKKPK KSVSSGHKNI GGLQHPNQSC NSSNSTSGEE DSGSTSFVKN IVSSSLKKKL  120
LPFGREEVLQ KPRSRSTQKR KLGEVEQAAF LLMALSCGSF YNQRRTKMDN ARKNAKCCGT  180
LGSKSSTLLV G*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572171.11e-135PREDICTED: GATA transcription factor 15-like
TrEMBLA0A2G2ZKG41e-134A0A2G2ZKG4_CAPAN; GATA transcription factor 23
STRINGPGSC0003DMT4000602411e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-31GATA transcription factor 15