PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g17900
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 541aa    MW: 60200.5 Da    PI: 5.8782
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g17900genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.51.4e-1281715402374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +elL++cAeavs+gd++ a+al++ l++ +s +g+pmqRl ay++e+L+arl++s+s +yk+l+++e +   sse +++++++++++P++kf++  aN 
  CA05g17900 171 KELLVACAEAVSDGDFSVAEALMNVLEQKVSVSGEPMQRLSAYMLEGLRARLFSSGSIIYKKLKCNEPT---SSELISYMQVLYHICPYYKFAYTSANV 266
                 789*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I ea+ +e+r+HiiDf+i qG QW+ L++ La Rp+gpp + iTgv++++s   +   l+ +gerL+kfAe++gvpfef++ +  +  +++le+++++
  CA05g17900 267 VIDEAMRNENRIHIIDFQIAQGSQWMFLMHNLARRPGGPPFVHITGVDDSQSAhaRGGGLHLVGERLSKFAESCGVPFEFHA-AGISGCEVQLENIHIR 364
                 *************************************************9988889999***********************.788999********** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gEalaVn+ + lh+++desv++ ++rd++L+lvkslsPk+v++veqe+++n++ Fl rf e+++yy+a+f+s++a  pr++++ri+ E+++++r++vn
  CA05g17900 365 HGEALAVNFPYVLHHMPDESVTTVNHRDRLLRLVKSLSPKIVTLVEQESNTNTSAFLPRFRETMDYYTAMFESIDAARPRDDKQRISAEEHCVARDVVN 463
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++acega+r+erhe ++kW++rl++aGF++ pls ++ + +  +l+ ++ + yr+ e++g+l+lgWk+r+L + SaWr
  CA05g17900 464 IIACEGADRVERHELFGKWSMRLMMAGFTQCPLSPSVGEAITGVLKDFSPN-YRLAESKGALYLGWKNRALATSSAWR 540
                 *************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.467144521IPR005202Transcription factor GRAS
PfamPF035144.9E-126171540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MQASQRPQSS GGVHKLYHQP TAKVEQYYSP YNVVNNNSND TSSSGTQHSY QTQNEQFFTL  60
DSLPDAGYVI YDSPPALSVS SNWSPFSPQC TQSYISDQHH SSDNTNGSPL SGCSVVNDGN  120
ELKHVLREME NNLLGPDSDI DEDSSCSFND EVSKPSKWNR LLEIAPSLDM KELLVACAEA  180
VSDGDFSVAE ALMNVLEQKV SVSGEPMQRL SAYMLEGLRA RLFSSGSIIY KKLKCNEPTS  240
SELISYMQVL YHICPYYKFA YTSANVVIDE AMRNENRIHI IDFQIAQGSQ WMFLMHNLAR  300
RPGGPPFVHI TGVDDSQSAH ARGGGLHLVG ERLSKFAESC GVPFEFHAAG ISGCEVQLEN  360
IHIRHGEALA VNFPYVLHHM PDESVTTVNH RDRLLRLVKS LSPKIVTLVE QESNTNTSAF  420
LPRFRETMDY YTAMFESIDA ARPRDDKQRI SAEEHCVARD VVNIIACEGA DRVERHELFG  480
KWSMRLMMAG FTQCPLSPSV GEAITGVLKD FSPNYRLAES KGALYLGWKN RALATSSAWR  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6017753926378Protein SCARECROW
5b3h_A9e-6117753925377Protein SCARECROW
5b3h_D9e-6117753925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892870.0AC189287.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0166A02, complete sequence.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554161.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_016554162.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_016554163.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1U8F4580.0A0A1U8F458_CAPAN; Scarecrow-like protein 5
TrEMBLA0A2G2ZK470.0A0A2G2ZK47_CAPAN; scarecrow-like protein 13
STRINGPGSC0003DMT4000217480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13