PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g16650

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 984aa MW: 108666 Da PI: 7.5554

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g16650	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	138	215	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls k+yhrrhkvC vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ CA05g16650 138 ICQVQDCQVDLSMSKDYHRRHKVCGVHSKAAQALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 215 5**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-30	133	200	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.906	136	213	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-36	138	218	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-28	139	212	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.15E-8	701	899	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.5E-9	767	902	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.13E-7	768	902	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MEARDFHGPV VSNLEFGGGK KAGEWDLNDW VWDGDRFTVA PLNKEIPVVP VTTGISDVFS 60 SERSDELTLG KGKEMEKRRR TIVIEDDDDD GQNGGEDGLL NLKLGEQLYP VMEGEGEKWE 120 GKSGKKAKIG GVSSNRTICQ VQDCQVDLSM SKDYHRRHKV CGVHSKAAQA LVGNVMQRFC 180 QQCSRFHVLE EFDEGKRSCR RRLAGHNKRR RKTNPENVAN GASMNDEGGN NYLLVSLLRI 240 LANVQFNSSD QAKDQDLLSY LLRNLASLAG ANNERNVSGL LPAPSGPQNA WTSMGAPKEV 300 SLSPNGNCST IPASEVTEKR IGSTSDAERG ISRNPCAAQP GSVCCRKESL PINTNASATT 360 SAPLKLNIDL NNIYDDSQVD IQKLQNSVAF ANAGAASSAC PPSISHDPHK SSSTRTSWNS 420 GSTSSLSPSS SSGEAQSRTD RIVFKLFGKD PGELPTALRK QILDWLSHSP SNIESYIRPG 480 CIILTIYLRM DKSTWEKLYC DLNSSLRKLL NASTCSFWHT GWVYTRVNDR VAFLYNGQVV 540 LDTSLPIRSH GSCGISIIKP IAVCASESVQ FLVKGFNLSR PTTRLLCALE GKYLVQGNCI 600 DMMMEGADSC MNHEEIQSVS VPCIVPNVTG RGFIEVEDHG LSSNFFPFIV AEKDVCSEIR 660 TLESIIEFAK MTDGFLQGTQ EFQARDQALD FLHELGWLLH RSHLKFRVDS GADLNPFTFQ 720 RFKWLIDFSV DHDWCAVVKK LLDVFFNGAV DVGQESSLDV PLREVGLLHR AVRRKCRAMV 780 DVLLKYRHRG AFDLSGLQKQ QDDRGYLFRP DAVGPGGLTP LHVVASLAGC ENLLNALIDD 840 PGQVGIEAWK SARDSTGLTP NDYACLRGHY SYVHMVQKKI NEKPDDGHVV LDIPGSYGHK 900 SVKIASFQTE KSLEKPIHRQ CKQCKQILSY RNSGTSLIYK PAMLSVVGIA VICVCVALLF 960 KSLPDVHYSF RPFRWDLLKY GSI*

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MEARDFHGPV VSNLEFGGGK KAGEWDLNDW VWDGDRFTVA PLNKEIPVVP VTTGISDVFS  60
SERSDELTLG KGKEMEKRRR TIVIEDDDDD GQNGGEDGLL NLKLGEQLYP VMEGEGEKWE  120
GKSGKKAKIG GVSSNRTICQ VQDCQVDLSM SKDYHRRHKV CGVHSKAAQA LVGNVMQRFC  180
QQCSRFHVLE EFDEGKRSCR RRLAGHNKRR RKTNPENVAN GASMNDEGGN NYLLVSLLRI  240
LANVQFNSSD QAKDQDLLSY LLRNLASLAG ANNERNVSGL LPAPSGPQNA WTSMGAPKEV  300
SLSPNGNCST IPASEVTEKR IGSTSDAERG ISRNPCAAQP GSVCCRKESL PINTNASATT  360
SAPLKLNIDL NNIYDDSQVD IQKLQNSVAF ANAGAASSAC PPSISHDPHK SSSTRTSWNS  420
GSTSSLSPSS SSGEAQSRTD RIVFKLFGKD PGELPTALRK QILDWLSHSP SNIESYIRPG  480
CIILTIYLRM DKSTWEKLYC DLNSSLRKLL NASTCSFWHT GWVYTRVNDR VAFLYNGQVV  540
LDTSLPIRSH GSCGISIIKP IAVCASESVQ FLVKGFNLSR PTTRLLCALE GKYLVQGNCI  600
DMMMEGADSC MNHEEIQSVS VPCIVPNVTG RGFIEVEDHG LSSNFFPFIV AEKDVCSEIR  660
TLESIIEFAK MTDGFLQGTQ EFQARDQALD FLHELGWLLH RSHLKFRVDS GADLNPFTFQ  720
RFKWLIDFSV DHDWCAVVKK LLDVFFNGAV DVGQESSLDV PLREVGLLHR AVRRKCRAMV  780
DVLLKYRHRG AFDLSGLQKQ QDDRGYLFRP DAVGPGGLTP LHVVASLAGC ENLLNALIDD  840
PGQVGIEAWK SARDSTGLTP NDYACLRGHY SYVHMVQKKI NEKPDDGHVV LDIPGSYGHK  900
SVKIASFQTE KSLEKPIHRQ CKQCKQILSY RNSGTSLIYK PAMLSVVGIA VICVCVALLF  960
KSLPDVHYSF RPFRWDLLKY GSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-28	133	212	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016573583.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A1U8GXQ4	0.0	A0A1U8GXQ4_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZJY5	0.0	A0A2G2ZJY5_CAPAN; squamosa promoter-binding-like protein 1
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1