PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g16530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 36803.7 Da PI: 6.7888 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++ ++ +G g+W++ ar+ g++Rt+k+c++rw++yl CA05g16530 39 RGPWTVEEDFTLINFIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 86 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ CA05g16530 92 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 135 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.459 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-31 | 36 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-16 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-22 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-11 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-23 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-7 | 112 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDHHQKIEVD SGRGGGRGVD YTKNNQEIRE EDIVMDLRRG PWTVEEDFTL INFIAHHGEG 60 RWNSLARCAG LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQH 120 LPGRTDNEIK NYWRTRVQKH AKQLKCDVNS KQFKDTMKYL WMPRLAERIQ AAAASNPATA 180 SSSGPPTTTY IQNQEIQHPL PNMNHHMSDY TPIPFIEKTN SLNYSATSAS SDNYSSDLTD 240 GCYNFPINQS NNQDYSQVNQ STNQMCYGES TINPTNYDFH HGFQGFQEVD QQNNTQWMDN 300 PWNIEDVCFL QQLNNDM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 34 | 139 | 2 | 106 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-170 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 1e-170 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016573567.1 | 0.0 | PREDICTED: transcription factor MYB108 | ||||
TrEMBL | A0A1U8GQM5 | 0.0 | A0A1U8GQM5_CAPAN; Transcription factor | ||||
TrEMBL | A0A2G2ZJU7 | 0.0 | A0A2G2ZJU7_CAPAN; transcription factor MYB108 | ||||
STRING | PGSC0003DMT400069841 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-84 | myb domain protein 78 |