PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g16020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 407aa MW: 44045 Da PI: 4.9391 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 85 | 130 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W+ eEd+ l ++++++G ++W+ Ia+ ++ gR++k+c++rw + CA05g16020 85 KEPWSREEDLVLMELINKFGARNWSMIAQGIP-GRSGKSCRLRWCNQ 130 679*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.2e-18 | 137 | 181 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ CA05g16020 137 RKPFTDEEDRIIINAHAVHGNK-WASIAKLLP-GRTDNAIKNHWNST 181 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.469 | 80 | 131 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-30 | 82 | 178 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 84 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 85 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 87 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-13 | 87 | 129 | No hit | No description |
PROSITE profile | PS51294 | 25.807 | 132 | 186 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-17 | 136 | 184 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 137 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 139 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.94E-13 | 139 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MNENAEKSNF SAVAVTAAVE NVSFEGGDAV LHGGGGEGNG GNASVDGGDA VLNGGNGGDD 60 FVDDGGDVEM SESGRGNRVS SGRVKEPWSR EEDLVLMELI NKFGARNWSM IAQGIPGRSG 120 KSCRLRWCNQ LDPLLKRKPF TDEEDRIIIN AHAVHGNKWA SIAKLLPGRT DNAIKNHWNS 180 TLRRRFAELW RVKPLCSVML DDSIDNAKVL FEEIKSHGDF NQIKPLEMLE GSRAECMSSQ 240 SEDKTQIYEI YDIPEKSPNF VSERSCSTSV ENSDPSASRP TEKIGGFYVC NPSATSRIVP 300 MQGPLIHTFS PDFDICKLLE GCVSAGETTV PQGCGYGCCA ASTNSSFKSS LLGPEFVEYE 360 EHPPHLGHEL ASIATDLNNI AWIRSGLEKA GELRNSRHSS TQVGFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-41 | 84 | 185 | 6 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016573458.1 | 0.0 | PREDICTED: myb-related protein Pp2-like | ||||
TrEMBL | A0A1U8GXC7 | 0.0 | A0A1U8GXC7_CAPAN; Transcription factor MYB44 | ||||
TrEMBL | A0A2G2ZJN7 | 0.0 | A0A2G2ZJN7_CAPAN; myb-related protein Pp2-like | ||||
STRING | PGSC0003DMT400069921 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 6e-89 | myb domain protein 109 |