PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA05g15200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27970.7 Da PI: 9.0571 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.8e-07 | 25 | 64 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 WT+eE +++ a + + +W+++a+ ++ g++ ++ CA05g15200 25 EWTKEENKRFESALAIYDETtpnRWSKVAEIIP-GKSVLDV 64 7*****************99*************.*998776 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3e-13 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky CA05g15200 122 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 166 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-4 | 17 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.899 | 18 | 72 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.7E-9 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.0E-11 | 24 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-6 | 25 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-7 | 25 | 72 | No hit | No description |
PROSITE profile | PS51294 | 19.357 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-16 | 116 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-18 | 118 | 170 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 119 | 166 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 119 | 169 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-9 | 122 | 166 | No hit | No description |
Pfam | PF00249 | 2.0E-11 | 122 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
METLCPTSFV PNSNWTMQQS KSTTEWTKEE NKRFESALAI YDETTPNRWS KVAEIIPGKS 60 VLDVMMQYKE LVADVSDIEA GLVPNPRRFV SSFALEFADH RKIHTFSKRG KSYDQERKKG 120 VPWTEEEHRR FLMGLEKYGK GDWRNISRNF VISKTPTQVA SHAQKYYLRQ LSGEKERKRP 180 SIHDITTVNL TNNELLNNNN KLMCEVKSYM SPLQRSTSPA DVLIGCWNNS FDGDLMAFGQ 240 FV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-133 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 1e-133 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016573387.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016573388.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-84 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1U8GQ47 | 0.0 | A0A1U8GQ47_CAPAN; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U8GX57 | 0.0 | A0A1U8GX57_CAPAN; Transcription factor DIVARICATA | ||||
STRING | PGSC0003DMT400069753 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-76 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|