PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g14230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26223.1 Da PI: 9.9291 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.6e-18 | 147 | 197 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdps k r++lg+f+t +Aa+a++ a+ k++g CA05g14230 147 NYRGVRRRP-WGKYAAEIRDPSR--KGSRIWLGTFDTDVDAARAYDCAAFKMRG 197 59*******.**********854..34**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.18E-32 | 146 | 205 | No hit | No description |
PROSITE profile | PS51032 | 24.605 | 147 | 205 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 147 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-23 | 147 | 206 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-38 | 147 | 211 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-32 | 147 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-13 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-13 | 187 | 207 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSPVFITSIV KTEPSTSTSL SDSPNSSYLN EPNSPISRYF NLHSDFPEFK IDSDIILSPT 60 YSSAVSSSTK ENKNNELKTA FKTDSDNILS PTYNSSAVSS STNKNKNNEH KNAFQTDADN 120 ILNPTHDNNC AISSSIKENK STETKKNYRG VRRRPWGKYA AEIRDPSRKG SRIWLGTFDT 180 DVDAARAYDC AAFKMRGRKA VLNFPLDAGK SGAPANIGRR RRRDSKMELM EVLNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 146 | 206 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY789637 | 0.0 | AY789637.1 Capsicum annuum ethylene responsive element binding protein C3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311922.1 | 1e-172 | ethylene-responsive transcription factor 5-like | ||||
TrEMBL | A0A1U8GQ26 | 1e-171 | A0A1U8GQ26_CAPAN; ethylene-responsive transcription factor 5-like | ||||
STRING | XP_009597659.1 | 1e-61 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 8e-46 | ERF family protein |