PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g13060

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GeBP

Protein Properties

Length: 453aa MW: 48886.4 Da PI: 5.4437

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g13060	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	78.9	8.3e-25	45	139	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+w+e Dei +LqGl+ +++ + d++ fy +++++s ++ksql+eK+rrL+kKf+ +++ +g ++s+ ++hdq ++l+k++W+ CA05g13060 45 KFHRIWTEPDEIRFLQGLVAGSSDNL-VYPRDLNVFYTRFSNNMSQPYTKSQLSEKLRRLRKKFRVVSSRLVKGFDISLLSPHDQALYDLAKQLWH 139 699***************977776.5556**************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-26	46	139	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MDSTLPILPS SKLPIKRKTP SSPTAVAEPA VDTEPGSDPK NPPFKFHRIW TEPDEIRFLQ 60 GLVAGSSDNL VYPRDLNVFY TRFSNNMSQP YTKSQLSEKL RRLRKKFRVV SSRLVKGFDI 120 SLLSPHDQAL YDLAKQLWHP DFAYTSPFNS DKSNKSGLVG VKVRFSGNVE QPGQDGITRN 180 GVEFEGEEEL REVNVELDRG KMGGKRVEVS RLDGPVRVGV VCGIGIGDIA AKVVMDVFDE 240 CLNEFRNGVG GERSDVGSFG SGVVGEKSNL GGFGNGVVGE RSSLGGFGNG VVGERSSFGD 300 FGSGVVGERS NVDGFESGVV EERSRIGDFT NGVVGESSNL DGVRNGFVGE RSNLGGFRNA 360 VVGERSNVDD LTNGVAGERS NLGDFTNGVV GERSNVGDFT NGVVGEGSNL GGLLKEASSG 420 KFEERWREQR VAELDVLARR MRLVLEHSLQ RQ*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MDSTLPILPS SKLPIKRKTP SSPTAVAEPA VDTEPGSDPK NPPFKFHRIW TEPDEIRFLQ  60
GLVAGSSDNL VYPRDLNVFY TRFSNNMSQP YTKSQLSEKL RRLRKKFRVV SSRLVKGFDI  120
SLLSPHDQAL YDLAKQLWHP DFAYTSPFNS DKSNKSGLVG VKVRFSGNVE QPGQDGITRN  180
GVEFEGEEEL REVNVELDRG KMGGKRVEVS RLDGPVRVGV VCGIGIGDIA AKVVMDVFDE  240
CLNEFRNGVG GERSDVGSFG SGVVGEKSNL GGFGNGVVGE RSSLGGFGNG VVGERSSFGD  300
FGSGVVGERS NVDGFESGVV EERSRIGDFT NGVVGESSNL DGVRNGFVGE RSNLGGFRNA  360
VVGERSNVDD LTNGVAGERS NLGDFTNGVV GERSNVGDFT NGVVGEGSNL GGLLKEASSG  420
KFEERWREQR VAELDVLARR MRLVLEHSLQ RQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006360388.1	1e-113	PREDICTED: uncharacterized protein LOC102597795
TrEMBL	A0A2G2ZIS2	0.0	A0A2G2ZIS2_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400096875	1e-112	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12822	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-07	DNA-binding storekeeper protein-related transcriptional regulator