PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g12710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 594aa MW: 66924.8 Da PI: 6.6408 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 238.9 | 2.1e-73 | 208 | 588 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL cA a+++g+l+++q+l l+el+s +gd+++Rlaa ++AL + l+ s+s ++++ ++ +++n + ++l f+++sP++++ + +a CA05g12710 208 EQLLNPCAAAITAGNLNRVQHLFYVLQELSSINGDANHRLAARGLQALTHYLSTpcSTSLISASAGITTFTSTNPKFFKNSLINFNDISPWFRIPNSIA 306 689**************************************************9755556667778888888888888888888*************** PP GRAS 99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvak 184 N+ Il+ + ++ + +Hi+D+++s+G+QWp+Ll++L+ Rp ++pp +R+T++ + ++ + +L fA+e+++++++n l CA05g12710 307 NSSILQILLKHdssRNLHILDIGVSHGVQWPTLLEELTHRPgGPPPLVRLTVITPTMENdqqrhnpfvVGPGGYNFTVQLLAFAKEININLQINRLENY 405 ******99877666899************************55566*******99766667777777766667788899****************9888 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklp.res 279 l++l+ + ++ +p+E l+++ +++lh+l ++ ++er+e+L+++ksl+Pk +v++e+++d+ ns ++F+++f + +ey ++++ds+++ + res CA05g12710 406 PLQNLDSQLINSSPDEILVICAQFRLHNLK---HQNPDERTELLRILKSLEPKGLVLSENNMDCscNScSNFATGFGRRVEYLWKFLDSTSVAYKgRES 501 *****************************8...66666778********************8875454369*******************887640344 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 e r++ ++ e+ +++++ g++ +e++ekW er++++GF ++ ++ + a++ll+k++ ++++rv+ ++g++ l Wk++p+ ++S W+ CA05g12710 502 ERRRM-----MEGEAAKALTNMGEM----NERKEKWCERMRTVGFAWEMFGANVIDRARALLKKYDnNWEMRVDAQDGCVDLWWKGEPVSFCSLWK 588 44444.....555699999999998....78888********************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.073 | 181 | 567 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-71 | 208 | 588 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MTIDEPEPDP TFDPISEWLA DPLSYIPSFL DEPYSLNDFY EESWWSPSES INQEMHINNN 60 NSLTSFDTSL IVTHTSATPL EPIIASHLXF DTSLIVTHTS ATPLEPIIAS HLPPLDSPRK 120 RKGNDSDYNF EASRKNQNPR IYDTDDGEAI VVERVTTRKT AGHKKATHKS TGNNGXERVT 180 TRKTAGHKKA THKSTGNNGN NREGRWAEQL LNPCAAAITA GNLNRVQHLF YVLQELSSIN 240 GDANHRLAAR GLQALTHYLS TPCSTSLISA SAGITTFTST NPKFFKNSLI NFNDISPWFR 300 IPNSIANSSI LQILLKHDSS RNLHILDIGV SHGVQWPTLL EELTHRPGGP PPLVRLTVIT 360 PTMENDQQRH NPFVVGPGGY NFTVQLLAFA KEININLQIN RLENYPLQNL DSQLINSSPD 420 EILVICAQFR LHNLKHQNPD ERTELLRILK SLEPKGLVLS ENNMDCSCNS CSNFATGFGR 480 RVEYLWKFLD STSVAYKGRE SERRRMMEGE AAKALTNMGE MNERKEKWCE RMRTVGFAWE 540 MFGANVIDRA RALLKKYDNN WEMRVDAQDG CVDLWWKGEP VSFCSLWKID PTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-34 | 204 | 588 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-34 | 204 | 588 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-34 | 204 | 588 | 30 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554867.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2G2ZII4 | 0.0 | A0A2G2ZII4_CAPAN; Nodulation-signaling pathway 1 protein | ||||
STRING | XP_009594760.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-131 | GRAS family protein |
Publications ? help Back to Top | |||
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