PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g12700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 567aa MW: 64130.2 Da PI: 6.5097 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 237.1 | 7.8e-73 | 181 | 561 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL cA a+++g+l+++q+l l+el+s +gd+++Rlaa ++AL + l+ s+s ++++ ++ +++n + ++l f+++sP++++ + +a CA05g12700 181 EQLLNPCAAAITAGNLNRVQHLFYVLQELSSLNGDANHRLAARGLQALTHYLSTpcSTSLISASAGITTFTSTNPKFFKNSLINFNDISPWFRIPNSIA 279 689**************************************************9755556667778888888888888888888*************** PP GRAS 99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvak 184 N+ Il+ + ++ + +Hi+D+++s+G+QWp+Ll++L+ Rp ++pp +R+T++ + ++ + +L fA+e+++++++n l CA05g12700 280 NSSILQILLKHdssRNLHILDIGVSHGVQWPTLLEELTHRPgGPPPLVRLTVITPTMENdqqrhnpfvVGPGGYNFTVQLLAFAKEININLQINRLENY 378 ******99877666899************************55566*******99766667777777766667788899****************9888 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklp.res 279 l++l+ + ++ +p+E l+++ +++lh+l ++ ++er+e+L+++ksl+Pk +v++e+++d+ ns ++F+++f + +ey ++++ds+++ + res CA05g12700 379 PLQNLDSQLINSSPDEILVICAQFRLHNLK---HQNPDERTELLRILKSLEPKGLVLSENNMDCscNScSDFATGFGRRVEYLWKFLDSTSVAYKgRES 474 *****************************8...66666778********************8875454369*******************887640344 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 e r++ ++ e+ ++++ g++ +e++ekW +r++++GF ++ ++ + a++ll+k++ ++++rv+ ++g++ l Wk++p+ ++S W+ CA05g12700 475 ERRRM-----MEGEAAKALTSMGEM----NERKEKWCKRMRTVGFAWEMFGANVIDRARALLKKYDnNWEMRVDAQDGCVDLWWKGEPVSFCSLWK 561 44444.....555689999999998....78888********************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.995 | 154 | 540 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-70 | 181 | 561 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MIKHQHQAIL SHYPSSSICN TMTIDEPEPD PTFDPISEWL ADPLSYIPSF LDEPYSLNDF 60 YEESWWSPSE SINQEMHINN NNSLTSFDTS LIVTHTSATP LEPIIASHLP PLDSPRKRKG 120 NDSDYNFEAS RKNQNPRIYD TDDGEAIVVE RVTTRKTAGH KKATHKSTGN NGNNREGRWA 180 EQLLNPCAAA ITAGNLNRVQ HLFYVLQELS SLNGDANHRL AARGLQALTH YLSTPCSTSL 240 ISASAGITTF TSTNPKFFKN SLINFNDISP WFRIPNSIAN SSILQILLKH DSSRNLHILD 300 IGVSHGVQWP TLLEELTHRP GGPPPLVRLT VITPTMENDQ QRHNPFVVGP GGYNFTVQLL 360 AFAKEININL QINRLENYPL QNLDSQLINS SPDEILVICA QFRLHNLKHQ NPDERTELLR 420 ILKSLEPKGL VLSENNMDCS CNSCSDFATG FGRRVEYLWK FLDSTSVAYK GRESERRRMM 480 EGEAAKALTS MGEMNERKEK WCKRMRTVGF AWEMFGANVI DRARALLKKY DNNWEMRVDA 540 QDGCVDLWWK GEPVSFCSLW KIDPTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-34 | 177 | 561 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 6e-35 | 177 | 561 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 6e-35 | 177 | 561 | 30 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554867.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2G2ZIH0 | 0.0 | A0A2G2ZIH0_CAPAN; Nodulation-signaling pathway 1 protein | ||||
STRING | XP_009594760.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-142 | GRAS family protein |
Publications ? help Back to Top | |||
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