PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g12080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21629.1 Da PI: 10.6852 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 90 | 140 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta +Aa+a++ a+++++g+ CA05g12080 90 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTARMAARAHDVAALAIKGH 140 69****888.**********854...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.537 | 90 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 90 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-32 | 90 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 90 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 90 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 91 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.47E-29 | 91 | 149 | No hit | No description |
PRINTS | PR00367 | 4.0E-10 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MENQEDIISL EILADHDHHD VFSNSSCNGL NSPSSTVTSS LSSSSSFSPS NAPILEKYQS 60 LRKIQEVVKN NKNEKMKKKK RNGDDDKHPT YRGVRKRSWG KWVSEIREPK KKSRIWLGTY 120 PTARMAARAH DVAALAIKGH TIYLNFPHLA DQYPRPSSSS PKDIQXSCHH IFWRKCGRRR 180 RNSSRAQPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 87 | 148 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 3e-60 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574677.1 | 1e-118 | PREDICTED: ethylene-responsive transcription factor ERF038-like isoform X1 | ||||
TrEMBL | A0A2G2ZIN7 | 1e-137 | A0A2G2ZIN7_CAPAN; Dehydration-responsive element-binding protein 3 | ||||
STRING | XP_009791350.1 | 2e-52 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-33 | ERF family protein |