PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g11270
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 395aa    MW: 45241.9 Da    PI: 8.7881
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g11270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP150.69.9e-471142562133
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec...eaesssssasnsss 87 
                 +gkkdrhski+T++g+RdRRvRls+++a++fFdLqd+LGfdk+sktieWL++ ++ aikel ++          +          +++ssss+++n+s 
  CA05g11270 114 TGKKDRHSKICTAQGMRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFNRSNNAIKELSENiqpkeysdgnK------ItitSNNSSSSEGKNDSL 206
                 79**************************************************************55554333320......233344444555554444 PP

         TCP  88 g.....kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                       ++ +    ++k++ s+  + n++k es +karararert+ekm+ik
  CA05g11270 207 MsefeeNSING--RKEKEKLSEMVQDNPHKrESMEKARARARERTKEKMMIK 256
                 45553222222..333333333344788888999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-44114254IPR005333Transcription factor, TCP
PROSITE profilePS5136936.254116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.115235252IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MFPSSNTHEP YSHTSKTFLE GSFTYDYQNP ISSSRQENPF FLNFPSLFLD DHHHESPLSQ  60
ILPHKHQDQQ PSDHHAKEGN FTHISGETSK EEMSIEAKTS SKKRNLSATP RRRTGKKDRH  120
SKICTAQGMR DRRVRLSLHI ARKFFDLQDM LGFDKASKTI EWLFNRSNNA IKELSENIQP  180
KEYSDGNKIT ITSNNSSSSE GKNDSLMSEF EENSINGRKE KEKLSEMVQD NPHKRESMEK  240
ARARARERTK EKMMIKGLEK CKEWYETNPN NMFDQLGSSR RNSGFLDQAS NYNSYNTSVN  300
QEKGSPHEAN SQSLGHHFAI QNYFGGASTS GLDSGNCFMS FLGNWEINYA PIKSSSYSPF  360
AGNPNSIYLG NSRYHQFQPL DQDKNLSCRH HRLE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574613.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A1U8H0N40.0A0A1U8H0N4_CAPAN; transcription factor DICHOTOMA-like
STRINGPGSC0003DMT4000193240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-30TCP domain protein 12