PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g09500
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 314aa    MW: 35327.7 Da    PI: 8.4901
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g09500genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.4e-36481911128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgy 82 
                 lp+G++F+Ptd+el+ e+L++kv +k+      ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+           + +
  CA05g09500  48 LPAGVKFDPTDQELI-EHLEAKVVAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecqdlqGGETR 144
                 799************.99****999885665443333333666646**********.555666799******************756555554433778 PP

         NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 W++tgk+++v++ +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  CA05g09500 145 WHKTGKTRPVMV-NGKQRGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191
                 ************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3944210IPR003441NAC domain
PROSITE profilePS5100533.49648210IPR003441NAC domain
PfamPF023652.8E-1649191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE  60
LIEHLEAKVV AKESKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECQDLQG GETRWHKTGK TRPVMVNGKQ RGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSN TTGSAGGGGE ANSDVNSRRD  240
SGSRSCSSSK DINNNFPSSH RDELSAAVCA AMSNYTTMDI QQFKPEHFSF LPFRKTFDHE  300
VFILFSTFIH FSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-134619113140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572927.10.0PREDICTED: NAC domain-containing protein 73
SwissprotQ9M0F81e-147NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1U8GNU80.0A0A1U8GNU8_CAPAN; NAC domain-containing protein 73
TrEMBLA0A2G2ZHS00.0A0A2G2ZHS0_CAPAN; NAC domain-containing protein 73
TrEMBLA0A2G3CGC80.0A0A2G3CGC8_CAPCH; NAC domain-containing protein 73
STRINGSolyc05g026180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-147NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]