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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
CA05g06870 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 293aa MW: 32251.1 Da PI: 10.1653 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CA05g06870 | genome | PEP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 346.8 | 4.9e-106 | 10 | 292 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernkalverdnkllalll 86
mdddg + rn+gyye++ l+ nlglqlmss+ +rd+k+ r +n + + ++++++rd +++ rd ++++ ++k+l++ +
CA05g06870 10 MDDDGLNMRNWGYYEQS--LRGNLGLQLMSSVVDRDTKPfltRRENPIMLGANGVFHSRDsiipeaplshIDY-VRDGWINH--------REKFLNMFP 97
9*****99*******99..**********************9777888******************9999999.899***99........789999999 PP
GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
+++++vl++t+ +s+q++++p+ +++ + ee +++ ke+ +k++ +++pk++kakk kk s+++k++ +++ +
CA05g06870 98 --------GSPYTTVLPETSASHSMQMIQQPDATKD----------VGVNAEEPPSVRKESGPSKRKTGGATPKAPKAKKSKKASSVPKENGNPSV--Q 176
........346899*************544333222..........22334455667778888888888999***********9999999888888..7 PP
GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284
r+k kks+d+v+ng+++D++++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+D
CA05g06870 177 RAKPAKKSMDIVINGIDMDITGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPID 275
9************************************************************************************************** PP
GAGA_bind 285 LkdhWAkHGtnkfvtir 301
L++hWAkHGtnkfvtir
CA05g06870 276 LRTHWAKHGTNKFVTIR 292
****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MFAFICSLLM DDDGLNMRNW GYYEQSLRGN LGLQLMSSVV DRDTKPFLTR RENPIMLGAN 60
GVFHSRDSII PEAPLSHIDY VRDGWINHRE KFLNMFPGSP YTTVLPETSA SHSMQMIQQP 120
DATKDVGVNA EEPPSVRKES GPSKRKTGGA TPKAPKAKKS KKASSVPKEN GNPSVQRAKP 180
AKKSMDIVIN GIDMDITGIP IPVCSCTGAP QQCYRWGCGG WQSACCTTSI SMYPLPMSTK 240
RRGARIAGRK MSQGAFKKVL EKLAAEGYNF ANPIDLRTHW AKHGTNKFVT IR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982312 | 0.0 | FJ982312.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
| GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
