PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g05360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 222aa MW: 23694 Da PI: 10.7496 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.3 | 3.1e-39 | 32 | 133 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ +++++ ++ +k++ CA05g05360 32 AVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRNSSTGISSSLSAPLDQKSQ 129 789******************************************************************777.44444444444455444444444444 PP TCP 101 qksa 104 q+++ CA05g05360 130 QQQQ 133 4443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.613 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.4E-35 | 39 | 131 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSTSAEGNGA IIDPQRQQQQ QPSGVGTNGA LAVKKPPVKD RHSKVDGRGR RIRMPIVCAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA SFSTVSVSVR NSSTGISSSL 120 SAPLDQKSQQ QQQLIPAPFI LGKRLRSDEE NLEHGNKDDV GAGAGTATAS VGPTAGFWAV 180 PARPDFGQIW SFAAXXXXXX XXXXXXXXXX XXXXXXXPPL R* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016564270.1 | 1e-138 | PREDICTED: transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 2e-68 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1U8FZJ5 | 1e-137 | A0A1U8FZJ5_CAPAN; transcription factor TCP21-like | ||||
STRING | Solyc04g009180.1.1 | 1e-111 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 9e-59 | TCP family protein |