PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g05090
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CO-like
Protein Properties Length: 427aa    MW: 46866.1 Da    PI: 4.8517
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g05090genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-06347442
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                ++C++++  ++  +C+ ++  lC +C  + H+       H+++p+
  CA05g05090  3 PVCELCGVARAVVYCKPDSARLCLSCDGYVHSAnplsrrHSRSPI 47
                79******99*********************66788888988776 PP
2zf-B_box25.43e-084487241
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41
                + ++C++++++++   C d  ++lCe C   +H g     H++++
  CA05g05090 44 RSPICDKCNSQPALVRCMDEAVCLCEGCDWDGH-GcigtgHRLQK 87
                6799*****************************.77888899877 PP
3CCT62.91e-21370413144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R +a++RY+eK+ktR F K+irY+sRKa+A++R RvKGrFvk+ 
  CA05g05090 370 RHEAKMRYNEKKKTRTFGKQIRYASRKARADTRRRVKGRFVKAG 413
                 899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.926147IPR000315B-box-type zinc finger
CDDcd000219.05E-5347No hitNo description
CDDcd000213.31E-44688No hitNo description
PfamPF062031.1E-16370412IPR010402CCT domain
PROSITE profilePS5101714.624370412IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDPVCELCGV ARAVVYCKPD SARLCLSCDG YVHSANPLSR RHSRSPICDK CNSQPALVRC  60
MDEAVCLCEG CDWDGHGCIG TGHRLQKLNP YTGCPSPDEF TRMFSLVLET SIGNDTSFGS  120
FGTRPRSSLC INENNSSLES KGNDDSLVAS KLNEFASNYK FESWVIPPDP NYMTSYNKDP  180
APFSEGSGLP KQDCPIKDLG LEEGDDLSEG VDFDDVTLNF DCGYEILGSS QQSHPRYSNE  240
DKELDCLVME KNSSVTGSNN VETSHEATSS VQQEYMGLQS SQMAAAASST NLLQTMNATA  300
NCVLMNPTCN GSIGALPYLP APIHPSMSLS LSNITGESSV TTEYQDCGLS PGFLNEAPWD  360
LSLENCPQRR HEAKMRYNEK KKTRTFGKQI RYASRKARAD TRRRVKGRFV KAGEAYDYDP  420
SETRDF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552612.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_016552613.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
TrEMBLA0A1U8EZI80.0A0A1U8EZI8_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZHU20.0A0A2G2ZHU2_CAPAN; zinc finger protein CONSTANS-LIKE 12-like isoform X1
STRINGSolyc05g046040.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-101B-box type zinc finger protein with CCT domain