PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g04480
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 298aa    MW: 33164.1 Da    PI: 5.5736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g04480genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-184289354
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++
  CA05g04480 42 YLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMR 89
                88******.**********965...5***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.78341103IPR001471AP2/ERF domain
CDDcd000182.55E-2641102No hitNo description
SMARTSM003803.9E-2841109IPR001471AP2/ERF domain
PRINTSPR003671.2E-84253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2542102IPR001471AP2/ERF domain
PfamPF008472.3E-114289IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-174289IPR016177DNA-binding domain
PRINTSPR003671.2E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDFINSSSSS STSKSTKPRK NIGATTQSVK QKAEEQQSSI RYLGVRRRPW GRYAAEIRDP  60
TTKERHWLGT FDTAEEAALA YDRAARSMRV NNKSNKPTRT NFVYSDMPHG YSVTCIVSPD  120
EEHQHHQQQI LVFGQAESAP APTVDCGAHF SHFSASNMNN VGGGGEFVLQ QYYNPNYSMH  180
MEDNYRYDIN NATSTELPPL PEDITSSSNY YYLNDQSTQF PTTTISEMGC SSSSSNNGLL  240
NEMIIGTNNE YQYGGSTITT TSSTTTTAGS FNYFGFDDCL QPLKDEPNNK SLGYWFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-174289351ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2470701e-142AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence.
GenBankAC2470721e-142AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence.
GenBankAC2471051e-142AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence.
GenBankAC2471141e-142AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence.
GenBankAC2471211e-142AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence.
GenBankAC2471311e-142AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence.
GenBankHG9755231e-142HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554343.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A2G2ZGD80.0A0A2G2ZGD8_CAPAN; Ethylene-responsive transcription factor ESR2
STRINGPGSC0003DMT4000055851e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-31ERF family protein