PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g04470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34447.4 Da PI: 5.3302 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.4e-18 | 42 | 90 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++ CA05g04470 42 YLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAARAMRS 90 88******.**********965...5************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.54E-26 | 41 | 102 | No hit | No description |
SMART | SM00380 | 1.1E-27 | 41 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.757 | 41 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-11 | 42 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 42 | 93 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-25 | 42 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MDFIKSSTSS STNKSTKPRK NNGASTQSVK QKAEEQQSNI RYLGVRRRPW GRYAAEIRDP 60 TTKERHWLGT FDTAQEAALA YDRAARAMRS NNKSNKPTRT NFVYSDMPHG YSVTCIVSPD 120 EVYQHQQQQI LVFGQAENAP APTVDCGARF SHFSASNMNN VGGDSGSGGA DFALQQYYCN 180 HNYDMHMEDS YRYDSNNTTS IELPPLPDDI TSSGNNCYYF NEQSTQLPIT TISEMGYNNS 240 NNNDSLNEMI IGTNNEYQYG GSTITTTSGT TATAGSFSYF GFDDCLQPLQ CSSNMQDKSN 300 NNSLAYWFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-17 | 42 | 91 | 3 | 53 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-17 | 42 | 101 | 6 | 67 | ATERF1 |
3gcc_A | 5e-17 | 42 | 101 | 6 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247070 | 1e-143 | AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence. | |||
GenBank | AC247072 | 1e-143 | AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence. | |||
GenBank | AC247105 | 1e-143 | AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence. | |||
GenBank | AC247114 | 1e-143 | AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence. | |||
GenBank | AC247121 | 1e-143 | AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence. | |||
GenBank | AC247131 | 1e-143 | AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence. | |||
GenBank | HG975523 | 1e-143 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554335.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A1U8FF11 | 0.0 | A0A1U8FF11_CAPAN; Ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | A0A2G2ZGD3 | 0.0 | A0A2G2ZGD3_CAPAN; ethylene-responsive transcription factor LEP-like | ||||
STRING | PGSC0003DMT400005585 | 1e-141 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 3e-29 | ERF family protein |