PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g04410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35728.1 Da PI: 7.4502 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.1e-52 | 13 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lp+GfrFhPtdeelv++yL++k++g+++++ ++i+e+d+yk++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v + ++ CA05g04410 13 LPAGFRFHPTDEELVQHYLCRKCAGQSISV-SIIAEIDLYKFDPWQLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGK--PKT 108 799***************************.89***************8777889*************************************98..778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+ap+g kt+W+mheyrl CA05g04410 109 LGIKKALVFYAGKAPRGIKTNWIMHEYRL 137 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-61 | 9 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.639 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-27 | 14 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MIKGIVGNQQ LGLPAGFRFH PTDEELVQHY LCRKCAGQSI SVSIIAEIDL YKFDPWQLPE 60 KALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPVGKPKTLG IKKALVFYAG 120 KAPRGIKTNW IMHEYRLANV DRSAGKSNNL RLDDWVLCRI YNKKGTLEKY YNVDNKESES 180 FGEFEDEIKP KIFPTQLAPA PGQXXXXXXX XXPRPQSTPA SDYFNFETSE SMTTTRMHTT 240 NSSSGSEHVL SSCDKEVQSA PKWDDLGTAA LDFQINYLDG LLNDPFEIQM QQQNCNIDQF 300 NTFQDMFLYM QKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-85 | 10 | 169 | 12 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY714222 | 0.0 | AY714222.1 Capsicum annuum NAC domain protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311911.1 | 0.0 | protein ATAF2-like | ||||
Swissprot | Q39013 | 1e-114 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2G2ZGJ3 | 0.0 | A0A2G2ZGJ3_CAPAN; NAC domain-containing protein 48 | ||||
STRING | Solyc04g009440.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-116 | NAC family protein |